Safe Haskell	None
Language	Haskell2010

Biobase.Types.Strand

Description

Strand information. A newtyped version, complete with serialization, pattern synonyms, being a PrimitiveArray index type, etc.

TODO will be expanded to encode biological sense information more clearly: http://en.wikipedia.org/wiki/Sense_%28molecular_biology%29.

Documentation

newtype Strand Source #

Constructors

Strand
Fields getStrand :: Int

Instances

Bounded Strand Source #
Methods minBound :: Strand # maxBound :: Strand #
Enum Strand Source #
Methods succ :: Strand -> Strand # pred :: Strand -> Strand # toEnum :: Int -> Strand # fromEnum :: Strand -> Int # enumFrom :: Strand -> [Strand] # enumFromThen :: Strand -> Strand -> [Strand] # enumFromTo :: Strand -> Strand -> [Strand] # enumFromThenTo :: Strand -> Strand -> Strand -> [Strand] #
Eq Strand Source #
Methods (==) :: Strand -> Strand -> Bool # (/=) :: Strand -> Strand -> Bool #
Ord Strand Source #
Methods compare :: Strand -> Strand -> Ordering # (<) :: Strand -> Strand -> Bool # (<=) :: Strand -> Strand -> Bool # (>) :: Strand -> Strand -> Bool # (>=) :: Strand -> Strand -> Bool # max :: Strand -> Strand -> Strand # min :: Strand -> Strand -> Strand #
Read Strand Source #
Methods readsPrec :: Int -> ReadS Strand # readList :: ReadS [Strand] # readPrec :: ReadPrec Strand # readListPrec :: ReadPrec [Strand] #
Show Strand Source #
Methods showsPrec :: Int -> Strand -> ShowS # show :: Strand -> String # showList :: [Strand] -> ShowS #
Generic Strand Source #
Associated Types type Rep Strand :: * -> * # Methods from :: Strand -> Rep Strand x # to :: Rep Strand x -> Strand #
Index Strand Source #
Methods linearIndex :: Strand -> Strand -> Strand -> Int # smallestLinearIndex :: Strand -> Int # largestLinearIndex :: Strand -> Int # size :: Strand -> Strand -> Int # inBounds :: Strand -> Strand -> Strand -> Bool #
IndexStream Strand Source #
Methods streamUp :: Monad m => Strand -> Strand -> Stream m Strand # streamDown :: Monad m => Strand -> Strand -> Stream m Strand #
Arbitrary Strand Source #
Methods arbitrary :: Gen Strand # shrink :: Strand -> [Strand] #
Hashable Strand Source #
Methods hashWithSalt :: Int -> Strand -> Int # hash :: Strand -> Int #
FromJSON Strand Source #
Methods parseJSON :: Value -> Parser Strand # parseJSONList :: Value -> Parser [Strand] #
ToJSON Strand Source #
Methods toJSON :: Strand -> Value # toEncoding :: Strand -> Encoding # toJSONList :: [Strand] -> Value # toEncodingList :: [Strand] -> Encoding #
Binary Strand Source #
Methods put :: Strand -> Put # get :: Get Strand #
Serialize Strand Source #
Methods put :: Putter Strand # get :: Get Strand #
NFData Strand Source #
Methods rnf :: Strand -> () #
Unbox Strand Source #

Vector Vector Strand Source #
Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) Strand -> m (Vector Strand) # basicUnsafeThaw :: PrimMonad m => Vector Strand -> m (Mutable Vector (PrimState m) Strand) # basicLength :: Vector Strand -> Int # basicUnsafeSlice :: Int -> Int -> Vector Strand -> Vector Strand # basicUnsafeIndexM :: Monad m => Vector Strand -> Int -> m Strand # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) Strand -> Vector Strand -> m () # elemseq :: Vector Strand -> Strand -> b -> b #
MVector MVector Strand Source #
Methods basicLength :: MVector s Strand -> Int # basicUnsafeSlice :: Int -> Int -> MVector s Strand -> MVector s Strand # basicOverlaps :: MVector s Strand -> MVector s Strand -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) Strand) # basicInitialize :: PrimMonad m => MVector (PrimState m) Strand -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> Strand -> m (MVector (PrimState m) Strand) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) Strand -> Int -> m Strand # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) Strand -> Int -> Strand -> m () # basicClear :: PrimMonad m => MVector (PrimState m) Strand -> m () # basicSet :: PrimMonad m => MVector (PrimState m) Strand -> Strand -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) Strand -> MVector (PrimState m) Strand -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) Strand -> MVector (PrimState m) Strand -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) Strand -> Int -> m (MVector (PrimState m) Strand) #
IndexStream z => IndexStream ((:.) z Strand) Source #
Methods streamUp :: Monad m => (z :. Strand) -> (z :. Strand) -> Stream m (z :. Strand) # streamDown :: Monad m => (z :. Strand) -> (z :. Strand) -> Stream m (z :. Strand) #
type Rep Strand Source #
type Rep Strand = D1 (MetaData "Strand" "Biobase.Types.Strand" "BiobaseTypes-0.1.2.0-4orDP6jtu4AAFNWn3qTAP0" True) (C1 (MetaCons "Strand" PrefixI True) (S1 (MetaSel (Just Symbol "getStrand") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int)))
data Vector Strand Source #
data Vector Strand = V_Strand (Vector Int)
data MVector s Strand Source #
data MVector s Strand = MV_Strand (MVector s Int)

pattern P :: Strand Source #

pattern M :: Strand Source #

pattern Sense :: Strand Source #

pattern AntiSense :: Strand Source #