Safe Haskell	None
Language	Haskell2010

Biobase.Types.Evalue

Description

Encode the number of hits to expect. This is typically dependent on some "database size". Evalues are bounded by [0,infinity).

TODO Evalues close to zero are more interesting. We should strongly consider log-conversion here.

Synopsis

Documentation

newtype Evalue Source #

Type-safe wrapper for e-values.

Constructors

Evalue
Fields getEvalue :: Double

Instances

Eq Evalue Source #
Methods (==) :: Evalue -> Evalue -> Bool # (/=) :: Evalue -> Evalue -> Bool #
Num Evalue Source #
Methods (+) :: Evalue -> Evalue -> Evalue # (-) :: Evalue -> Evalue -> Evalue # (*) :: Evalue -> Evalue -> Evalue # negate :: Evalue -> Evalue # abs :: Evalue -> Evalue # signum :: Evalue -> Evalue # fromInteger :: Integer -> Evalue #
Ord Evalue Source #
Methods compare :: Evalue -> Evalue -> Ordering # (<) :: Evalue -> Evalue -> Bool # (<=) :: Evalue -> Evalue -> Bool # (>) :: Evalue -> Evalue -> Bool # (>=) :: Evalue -> Evalue -> Bool # max :: Evalue -> Evalue -> Evalue # min :: Evalue -> Evalue -> Evalue #
Read Evalue Source #
Methods readsPrec :: Int -> ReadS Evalue # readList :: ReadS [Evalue] # readPrec :: ReadPrec Evalue # readListPrec :: ReadPrec [Evalue] #
Show Evalue Source #
Methods showsPrec :: Int -> Evalue -> ShowS # show :: Evalue -> String # showList :: [Evalue] -> ShowS #
Generic Evalue Source #
Associated Types type Rep Evalue :: * -> * # Methods from :: Evalue -> Rep Evalue x # to :: Rep Evalue x -> Evalue #
Hashable Evalue Source #
Methods hashWithSalt :: Int -> Evalue -> Int # hash :: Evalue -> Int #
ToJSON Evalue Source #
Methods toJSON :: Evalue -> Value # toEncoding :: Evalue -> Encoding # toJSONList :: [Evalue] -> Value # toEncodingList :: [Evalue] -> Encoding #
FromJSON Evalue Source #
Methods parseJSON :: Value -> Parser Evalue # parseJSONList :: Value -> Parser [Evalue] #
Binary Evalue Source #
Methods put :: Evalue -> Put # get :: Get Evalue # putList :: [Evalue] -> Put #
Serialize Evalue Source #
Methods put :: Putter Evalue # get :: Get Evalue #
Default Evalue Source #	By default, we expect no hits.
Methods def :: Evalue #
NFData Evalue Source #
Methods rnf :: Evalue -> () #
Unbox Evalue Source #

NumericalExtremes Evalue Source #
Methods maxFinite :: Evalue Source # minFinite :: Evalue Source # maxExtreme :: Evalue Source # minExtreme :: Evalue Source # maxLarge :: Evalue Source # minLarge :: Evalue Source #
Vector Vector Evalue Source #
Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) Evalue -> m (Vector Evalue) # basicUnsafeThaw :: PrimMonad m => Vector Evalue -> m (Mutable Vector (PrimState m) Evalue) # basicLength :: Vector Evalue -> Int # basicUnsafeSlice :: Int -> Int -> Vector Evalue -> Vector Evalue # basicUnsafeIndexM :: Monad m => Vector Evalue -> Int -> m Evalue # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) Evalue -> Vector Evalue -> m () # elemseq :: Vector Evalue -> Evalue -> b -> b #
MVector MVector Evalue Source #
Methods basicLength :: MVector s Evalue -> Int # basicUnsafeSlice :: Int -> Int -> MVector s Evalue -> MVector s Evalue # basicOverlaps :: MVector s Evalue -> MVector s Evalue -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) Evalue) # basicInitialize :: PrimMonad m => MVector (PrimState m) Evalue -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> Evalue -> m (MVector (PrimState m) Evalue) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> m Evalue # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> Evalue -> m () # basicClear :: PrimMonad m => MVector (PrimState m) Evalue -> m () # basicSet :: PrimMonad m => MVector (PrimState m) Evalue -> Evalue -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) Evalue -> MVector (PrimState m) Evalue -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) Evalue -> MVector (PrimState m) Evalue -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> m (MVector (PrimState m) Evalue) #
type Rep Evalue Source #
type Rep Evalue = D1 (MetaData "Evalue" "Biobase.Types.Evalue" "BiobaseTypes-0.1.2.1-1LTYzU1e5OWItpBBqXiV1g" True) (C1 (MetaCons "Evalue" PrefixI True) (S1 (MetaSel (Just Symbol "getEvalue") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Double)))
data Vector Evalue Source #
data Vector Evalue = V_Evalue (Vector Double)
data MVector s Evalue Source #
data MVector s Evalue = MV_Evalue (MVector s Double)