Biobase.Types.ReadingFrame

Documentation

newtype ReadingFrame

The Reading frame. Sequence indexing starts at position 1, which starts reading frame 1. Reading frame 2 and 3 start at position 2 and 3 respectively.

The reading frame should be constructed from an Index 1 with a smart constructor to get the frame calculation right.

Constructors

ReadingFrame

Fields

• getReadingFrame :: Int

Instances

Eq ReadingFrame

Defined in Biobase.Types.ReadingFrame

Methods

(==) :: ReadingFrame -> ReadingFrame -> Bool

(/=) :: ReadingFrame -> ReadingFrame -> Bool

Ord ReadingFrame

Defined in Biobase.Types.ReadingFrame

Methods

compare :: ReadingFrame -> ReadingFrame -> Ordering

(<) :: ReadingFrame -> ReadingFrame -> Bool

(<=) :: ReadingFrame -> ReadingFrame -> Bool

(>) :: ReadingFrame -> ReadingFrame -> Bool

(>=) :: ReadingFrame -> ReadingFrame -> Bool

max :: ReadingFrame -> ReadingFrame -> ReadingFrame

min :: ReadingFrame -> ReadingFrame -> ReadingFrame

Generic ReadingFrame

Defined in Biobase.Types.ReadingFrame

Associated Types

type Rep ReadingFrame :: Type -> Type

Methods

from :: ReadingFrame -> Rep ReadingFrame x

to :: Rep ReadingFrame x -> ReadingFrame

type Rep ReadingFrame

Defined in Biobase.Types.ReadingFrame

type Rep ReadingFrame = D1 (MetaData "ReadingFrame" "Biobase.Types.ReadingFrame" "BiobaseTypes-0.1.4.0-2SJmLmHyrafG90Dl3d2I5j" True) (C1 (MetaCons "ReadingFrame" PrefixI True) (S1 (MetaSel (Just "getReadingFrame") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int)))

nextReadingFrame :: ReadingFrame -> ReadingFrame

prevReadingFrame :: ReadingFrame -> ReadingFrame

fromIndex :: Index 1 -> ReadingFrame

TODO should this be a type class, since we might reasonably want to construct from a number of possible indices?