Biobase.Types.Evalue

Encode the number of hits to expect. This is typically dependent on some "database size". Evalues are bounded by [0,infinity).

TODO Evalues close to zero are more interesting. We should strongly consider log-conversion here.

Documentation

newtype Evalue

Type-safe wrapper for e-values.

Constructors

Evalue

Fields

• getEvalue :: Double

Instances

Eq Evalue

Defined in Biobase.Types.Evalue

Methods

(==) :: Evalue -> Evalue -> Bool

(/=) :: Evalue -> Evalue -> Bool

Num Evalue

Defined in Biobase.Types.Evalue

Methods

(+) :: Evalue -> Evalue -> Evalue

(-) :: Evalue -> Evalue -> Evalue

(*) :: Evalue -> Evalue -> Evalue

negate :: Evalue -> Evalue

abs :: Evalue -> Evalue

signum :: Evalue -> Evalue

fromInteger :: Integer -> Evalue

Ord Evalue

Defined in Biobase.Types.Evalue

Methods

compare :: Evalue -> Evalue -> Ordering

(<) :: Evalue -> Evalue -> Bool

(<=) :: Evalue -> Evalue -> Bool

(>) :: Evalue -> Evalue -> Bool

(>=) :: Evalue -> Evalue -> Bool

max :: Evalue -> Evalue -> Evalue

min :: Evalue -> Evalue -> Evalue

Read Evalue

Defined in Biobase.Types.Evalue

Methods

readsPrec :: Int -> ReadS Evalue

readList :: ReadS [Evalue]

readPrec :: ReadPrec Evalue

readListPrec :: ReadPrec [Evalue]

Show Evalue

Defined in Biobase.Types.Evalue

Methods

showsPrec :: Int -> Evalue -> ShowS

show :: Evalue -> String

showList :: [Evalue] -> ShowS

Generic Evalue

Defined in Biobase.Types.Evalue

Associated Types

type Rep Evalue :: Type -> Type

Methods

from :: Evalue -> Rep Evalue x

to :: Rep Evalue x -> Evalue

NumericLimits Evalue

Defined in Biobase.Types.Evalue

Methods

minFinite :: Evalue

maxFinite :: Evalue

Hashable Evalue

Defined in Biobase.Types.Evalue

Methods

hashWithSalt :: Int -> Evalue -> Int

hash :: Evalue -> Int

ToJSON Evalue

Defined in Biobase.Types.Evalue

Methods

toJSON :: Evalue -> Value

toEncoding :: Evalue -> Encoding

toJSONList :: [Evalue] -> Value

toEncodingList :: [Evalue] -> Encoding

FromJSON Evalue

Defined in Biobase.Types.Evalue

Methods

parseJSON :: Value -> Parser Evalue

parseJSONList :: Value -> Parser [Evalue]

Binary Evalue

Defined in Biobase.Types.Evalue

Methods

put :: Evalue -> Put

get :: Get Evalue

putList :: [Evalue] -> Put

Serialize Evalue

Defined in Biobase.Types.Evalue

Methods

put :: Putter Evalue

get :: Get Evalue

Default Evalue

By default, we expect no hits.

Defined in Biobase.Types.Evalue

Methods

def :: Evalue

NFData Evalue

Defined in Biobase.Types.Evalue

Methods

rnf :: Evalue -> ()

Unbox Evalue

Defined in Biobase.Types.Evalue

Wrapped Evalue

Defined in Biobase.Types.Evalue

Associated Types

type Unwrapped Evalue

Methods

_Wrapped' :: Iso' Evalue (Unwrapped Evalue)

Vector Vector Evalue

Defined in Biobase.Types.Evalue

Methods

basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) Evalue -> m (Vector Evalue)

basicUnsafeThaw :: PrimMonad m => Vector Evalue -> m (Mutable Vector (PrimState m) Evalue)

basicLength :: Vector Evalue -> Int

basicUnsafeSlice :: Int -> Int -> Vector Evalue -> Vector Evalue

basicUnsafeIndexM :: Monad m => Vector Evalue -> Int -> m Evalue

basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) Evalue -> Vector Evalue -> m ()

elemseq :: Vector Evalue -> Evalue -> b -> b

Evalue ~ t => Rewrapped Evalue t

Defined in Biobase.Types.Evalue

MVector MVector Evalue

Defined in Biobase.Types.Evalue

Methods

basicLength :: MVector s Evalue -> Int

basicUnsafeSlice :: Int -> Int -> MVector s Evalue -> MVector s Evalue

basicOverlaps :: MVector s Evalue -> MVector s Evalue -> Bool

basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) Evalue)

basicInitialize :: PrimMonad m => MVector (PrimState m) Evalue -> m ()

basicUnsafeReplicate :: PrimMonad m => Int -> Evalue -> m (MVector (PrimState m) Evalue)

basicUnsafeRead :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> m Evalue

basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> Evalue -> m ()

basicClear :: PrimMonad m => MVector (PrimState m) Evalue -> m ()

basicSet :: PrimMonad m => MVector (PrimState m) Evalue -> Evalue -> m ()

basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) Evalue -> MVector (PrimState m) Evalue -> m ()

basicUnsafeMove :: PrimMonad m => MVector (PrimState m) Evalue -> MVector (PrimState m) Evalue -> m ()

basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> m (MVector (PrimState m) Evalue)

type Rep Evalue

Defined in Biobase.Types.Evalue

type Rep Evalue = D1 ('MetaData "Evalue" "Biobase.Types.Evalue" "BiobaseTypes-0.2.1.0-KNWEaQoA0aY419BnftjfF1" 'True) (C1 ('MetaCons "Evalue" 'PrefixI 'True) (S1 ('MetaSel ('Just "getEvalue") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Double)))

newtype Vector Evalue

Defined in Biobase.Types.Evalue

newtype Vector Evalue = V_Evalue (Vector Double)

type Unwrapped Evalue

Defined in Biobase.Types.Evalue

type Unwrapped Evalue = Double

newtype MVector s Evalue

Defined in Biobase.Types.Evalue

newtype MVector s Evalue = MV_Evalue (MVector s Double)