BiobaseXNA-0.11.0.0: Efficient RNA/DNA/Protein Primary/Secondary Structure

Safe HaskellNone
LanguageHaskell2010

Biobase.Secondary.Structure

Description

A secondary structure, with sequence, Vienna compatible canonical secondary structure, extended structure, and additional information.

This is the structure that will be returned by prediction algorithms in the future.

TODO we will need ex- and import functions to a number of standard formats. There is an open feature request to export to something that resembles FASTA with additional information.

Synopsis

Documentation

data SecondaryStructure Source #

A sequence, complete with secondary structure. While this structure is rather RNA-centric, there is nothing that prohibits us from using this for DNA.

TODO Generics, Cereal, Binary, Aeson instances

Constructors

SS 

Fields