0.11.0.1
0.11.0.0
0.10.0.0
- redesigned Biobase.Secondary.Basepair
0.9.3.1
- removed upper version bounds, bumped dependent versions
- added d1Distance for fast basepair distance calculations
0.9.3.0
- bigger version bump together with multiple ghc compatibility
0.9.2.1
- stack.yaml, some version bumping
0.9.2.0
- fixed overlapping instances in AA
0.9.1.0
- introduction of pattern synonyms for letters in molecular alphabets
- travis-ci integration
0.9.0.0
- major cleanup of the XNA library: explicit encoding of RNA,DNA, or XNA (XNA
contains both U and T)
- IUPAC notation (degenerate nucleotides) has an efficient encoding as well
- translation between XNA and protein (Biobase.Primary.Trans)
- import Biobase.Primary to get everything under Primary.*
- import Biobase.Secondary to get everything under Secondary.*
- SubOptDistance now extends all structure lines of RNAsubopt with a third
field, the distance
- Diagrams provide methods to validate folding and cofolding secondary
structure strings.
- serialization capabilities for 'Letter's
0.8.3.0
- bugfix version: use vector-th-unbox to generate unboxed vector instances
0.8.2.0
- dotBracket -> unsafeDotBracket
- new 'dotBracket' function works in the error monad
0.8.1.1
- added T/U conversion functions
0.8.1.0
- Biobase.Primary.IUPAC for degenerate base symbol conversion
0.8.0.0
- Biobase.Codon -> Biobase.AAseq
- and efficient encoding of AAseqs
0.7
- updated to PrimitiveArray >= 0.5
- added Codon table
0.6.2.0
- Updated to PrimitiveArray >= 0.2.0.0