Index

AA
1 (Type/Class)	Biobase.AAseq
2 (Data Constructor)	Biobase.AAseq
aA	Biobase.AAseq
aACharList	Biobase.AAseq
aaRange	Biobase.AAseq
AAseq	Biobase.AAseq
aB	Biobase.AAseq
aC	Biobase.AAseq
acgt	Biobase.Primary
acgu	Biobase.Primary
aD	Biobase.AAseq
aE	Biobase.AAseq
aF	Biobase.AAseq
aG	Biobase.AAseq
aH	Biobase.AAseq
aI	Biobase.AAseq
aK	Biobase.AAseq
aL	Biobase.AAseq
aM	Biobase.AAseq
aN	Biobase.AAseq
antiCT	Biobase.Secondary
aP	Biobase.AAseq
aQ	Biobase.AAseq
aR	Biobase.AAseq
aS	Biobase.AAseq
aStop	Biobase.AAseq
aT	Biobase.AAseq
aUndefined	Biobase.AAseq
aV	Biobase.AAseq
aW	Biobase.AAseq
aX	Biobase.AAseq
aY	Biobase.AAseq
aZ	Biobase.AAseq
baseL	Biobase.Secondary
baseP	Biobase.Secondary
baseR	Biobase.Secondary
BaseSelect	Biobase.Secondary
baseT	Biobase.Secondary
bonusCC	Biobase.Secondary.Constraint
bonusTable	Biobase.Secondary.Constraint
Bounds	Biobase.Primary.Bounds
cgau	Biobase.Primary
cgnsP	Biobase.Secondary.Vienna
cguaP	Biobase.Secondary.Vienna
charAAList	Biobase.AAseq
charCTList	Biobase.Secondary
charEdgeList	Biobase.Secondary
charNucList	Biobase.Primary
cHH	Biobase.Secondary
cHS	Biobase.Secondary
cHW	Biobase.Secondary
cis	Biobase.Secondary
codonTable	Biobase.AAseq
Constraint
1 (Type/Class)	Biobase.Secondary.Constraint
2 (Data Constructor)	Biobase.Secondary.Constraint
cSH	Biobase.Secondary
cSS	Biobase.Secondary
cSW	Biobase.Secondary
CT	Biobase.Secondary
ctCharList	Biobase.Secondary
CTisomerism	Biobase.Secondary
cWH	Biobase.Secondary
cWS	Biobase.Secondary
cWW	Biobase.Secondary
D1S	Biobase.Secondary.Diagrams
D1Secondary	Biobase.Secondary.Diagrams
d1sTree	Biobase.Secondary.Diagrams
d2Compare	Biobase.Secondary.Diagrams
d2Grouping	Biobase.Secondary.Diagrams
D2S	Biobase.Secondary.Diagrams
D2Secondary	Biobase.Secondary.Diagrams
d2sTree	Biobase.Secondary.Diagrams
defaultIsostericityMap	Biobase.Secondary.Isostericity
Degenerate	Biobase.Primary.IUPAC
detailedCSV	Biobase.Secondary.Isostericity
dotBracket	Biobase.Secondary.Diagrams
Edge
1 (Type/Class)	Biobase.Secondary
2 (Data Constructor)	Biobase.Secondary
edgeCharList	Biobase.Secondary
edgeUndefined	Biobase.Secondary
ExtPair	Biobase.Secondary
ExtPairAnnotation	Biobase.Secondary
ExtPairIdx	Biobase.Secondary
fromAA	Biobase.AAseq
fromD1S	Biobase.Secondary.Diagrams
fromD2S	Biobase.Secondary.Diagrams
fromNuc	Biobase.Primary
fromSymbol	Biobase.Primary.IUPAC
fromViennaPair	Biobase.Secondary.Vienna
getClasses	Biobase.Secondary.Isostericity
HashedPrimary
1 (Type/Class)	Biobase.Primary.Hashed
2 (Data Constructor)	Biobase.Primary.Hashed
hoogsteen	Biobase.Secondary
inClass	Biobase.Secondary.Isostericity
IsostericityLookup	Biobase.Secondary.Isostericity
isViennaPair	Biobase.Secondary.Vienna
iupacList	Biobase.Primary.IUPAC
iupacNucleotides	Biobase.Primary.IUPAC
maxExtended	Biobase.Primary.Bounds
maxNormal	Biobase.Primary.Bounds
minExtended	Biobase.Primary.Bounds
minNormal	Biobase.Primary.Bounds
MkAAseq	Biobase.AAseq
mkAAseq	Biobase.AAseq
MkConstraint	Biobase.Secondary.Constraint
mkConstraint	Biobase.Secondary.Constraint
mkD1S	Biobase.Secondary.Diagrams
MkD1Secondary	Biobase.Secondary.Diagrams
mkD2S	Biobase.Secondary.Diagrams
MkD2Secondary	Biobase.Secondary.Diagrams
mkHashedPrimary	Biobase.Primary.Hashed
mkIsostericityList	Biobase.Secondary.Isostericity
mkIsostericityMap	Biobase.Secondary.Isostericity
mkNuc	Biobase.Primary
MkPrimary	Biobase.Primary
mkPrimary	Biobase.Primary
MkViennaPair	Biobase.Secondary.Vienna
mkViennaPair	Biobase.Secondary.Vienna
nA	Biobase.Primary
nacgt	Biobase.Primary
nacgu	Biobase.Primary
nC	Biobase.Primary
nG	Biobase.Primary
nIMI	Biobase.Primary
nN	Biobase.Primary
nobonusCC	Biobase.Secondary.Constraint
nT	Biobase.Primary
nU	Biobase.Primary
Nuc
1 (Type/Class)	Biobase.Primary
2 (Data Constructor)	Biobase.Primary
nucCharList	Biobase.Primary
nucCodonTable	Biobase.AAseq
nUndefined	Biobase.Primary
Pair	Biobase.Secondary
PairIdx	Biobase.Secondary
pairToString	Biobase.Secondary.Vienna
paraCT	Biobase.Secondary
parsedCSV	Biobase.Secondary.Isostericity
Primary	Biobase.Primary
primaryToAAseq	Biobase.AAseq
removeByCounting	Biobase.Secondary.PseudoKnots
RemovePseudoKnots	Biobase.Secondary.PseudoKnots
revPair	Biobase.Secondary.Vienna
SSExt	Biobase.Secondary.Diagrams
SSTree
1 (Type/Class)	Biobase.Secondary.Diagrams
2 (Data Constructor)	Biobase.Secondary.Diagrams
sugar	Biobase.Secondary
tHH	Biobase.Secondary
threeChar	Biobase.Secondary
tHS	Biobase.Secondary
tHW	Biobase.Secondary
toAA	Biobase.AAseq
toSymbol	Biobase.Primary.IUPAC
trans	Biobase.Secondary
tSH	Biobase.Secondary
tSS	Biobase.Secondary
tSW	Biobase.Secondary
tWH	Biobase.Secondary
tWS	Biobase.Secondary
tWW	Biobase.Secondary
unAA	Biobase.AAseq
unConstraint	Biobase.Secondary.Constraint
unCT	Biobase.Secondary
unD1S	Biobase.Secondary.Diagrams
unD2S	Biobase.Secondary.Diagrams
undefinedCT	Biobase.Secondary
unEdge	Biobase.Secondary
unknownCT	Biobase.Secondary
unknownEdge	Biobase.Secondary
unNuc	Biobase.Primary
updL	Biobase.Secondary
updP	Biobase.Secondary
updR	Biobase.Secondary
updT	Biobase.Secondary
ViennaPair
1 (Type/Class)	Biobase.Secondary.Vienna
2 (Data Constructor)	Biobase.Secondary.Vienna
viennaPairTable	Biobase.Secondary.Vienna
vpAU	Biobase.Secondary.Vienna
vpCG	Biobase.Secondary.Vienna
vpGC	Biobase.Secondary.Vienna
vpGU	Biobase.Secondary.Vienna
vpNP	Biobase.Secondary.Vienna
vpNS	Biobase.Secondary.Vienna
vpUA	Biobase.Secondary.Vienna
vpUG	Biobase.Secondary.Vienna
vpUndefined	Biobase.Secondary.Vienna
wc	Biobase.Secondary