The BiobaseXNA package

[ Tags: bioinformatics, gpl, library, program ] [ Propose Tags ]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

Properties

Versions 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1, 0.10.0.0 (info)
Change log changelog
Dependencies base (>3 && <5), bytestring (>=0.10), cmdargs (>=0.10), containers (>=0.4), csv (>=0.1.2), file-embed (>=0.0.4.7), primitive (>=0.5), PrimitiveArray (>=0.5.3), repa (>=3.2), text (>=0.11), tuple (>=0.2), vector (>=0.10) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011-2013
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repo head: git clone git://github.com/choener/BiobaseXNA
Uploaded Mon Feb 3 21:22:36 UTC 2014 by ChristianHoener
Distributions NixOS:0.10.0.0
Executables SubOptDistance
Downloads 12903 total (271 in the last 30 days)
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Status Docs available [build log]
Successful builds reported [all 1 reports]
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