Biobase.Primary.Nuc.RNA

Documentation

data RNA

RNA nucleotides.

Instances

IsostericityLookup ExtPair

For extended basepairs, we take the default mapping and go from there.

TODO inClass missing

IsostericityLookup Pair

Normal basepairs are assumed to have cWW basepairing.

TODO inClass missing

Bounded (Letter RNA)

Enum (Letter RNA)

Read (Letter RNA)

Show (Letter RNA)

IsString [Letter RNA]

Degenerate (Letter RNA)

MkPrimary (Vector Char) RNA

Complement (Letter RNA) (Letter RNA)

Complement (Letter RNA) (Letter DNA)

Complement (Letter DNA) (Letter RNA)

MkViennaPair (Letter RNA, Letter RNA)

pattern A :: Letter RNA

pattern C :: Letter RNA

pattern G :: Letter RNA

pattern U :: Letter RNA

pattern N :: Letter RNA

acgu :: [Letter RNA]

charRNA :: Char -> Letter RNA

rnaChar :: Letter RNA -> Char

rnaSeq :: MkPrimary n RNA => n -> Primary RNA