Build #1 for CMCompare-0.0.1.1
| Package | CMCompare-0.0.1.1 |
|---|
| Install | DependencyFailed cmdargs-0.3 |
|---|---|
| Docs | NotTried |
| Tests | NotTried |
| Time submitted | unknown |
|---|---|
| Compiler | ghc-7.6.3 |
| OS | linux |
| Arch | x86_64 |
| Dependencies | cmdargs-0.3, base-4.6.0.1, array-0.4.0.1, HsTools-0.0.1.1, BiobaseInfernal-0.0.2.1, Biobase-0.0.2.1 |
| Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Resolving dependencies...
Configuring HsTools-0.0.1.1...
Building HsTools-0.0.1.1...
Preprocessing library HsTools-0.0.1.1...
[1 of 3] Compiling Debug.Trace.Tools ( Debug/Trace/Tools.hs, dist/build/Debug/Trace/Tools.o )
[2 of 3] Compiling Data.Ix.List ( Data/Ix/List.hs, dist/build/Data/Ix/List.o )
[3 of 3] Compiling Data.Ix.Tuple ( Data/Ix/Tuple.hs, dist/build/Data/Ix/Tuple.o )
In-place registering HsTools-0.0.1.1...
Running Haddock for HsTools-0.0.1.1...
Running hscolour for HsTools-0.0.1.1...
Preprocessing library HsTools-0.0.1.1...
Preprocessing library HsTools-0.0.1.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
75% ( 3 / 4) in 'Debug.Trace.Tools'
100% ( 4 / 4) in 'Data.Ix.List'
0% ( 0 / 1) in 'Data.Ix.Tuple'
Documentation created: dist/doc/html/HsTools/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/HsTools-0.0.1.1/ghc-7.6.3
Registering HsTools-0.0.1.1...
Installed HsTools-0.0.1.1
Downloading cmdargs-0.3...
Configuring cmdargs-0.3...
Building cmdargs-0.3...
Preprocessing library cmdargs-0.3...
[ 1 of 19] Compiling System.Console.CmdArgs.Implicit.Ann ( System/Console/CmdArgs/Implicit/Ann.hs, dist/build/System/Console/CmdArgs/Implicit/Ann.o )
[ 2 of 19] Compiling Data.Generics.Any ( Data/Generics/Any.hs, dist/build/Data/Generics/Any.o )
Data/Generics/Any.hs:87:21:
Couldn't match type `m0 b0'
with `forall d.
Data d =>
StateT [Any] transformers-0.3.0.0:Data.Functor.Identity.Identity d'
Expected type: m0 [Any]
-> ([Any] -> m0 b0)
-> forall d.
Data d =>
StateT [Any] transformers-0.3.0.0:Data.Functor.Identity.Identity d
Actual type: m0 [Any] -> ([Any] -> m0 b0) -> m0 b0
In a stmt of a 'do' block: c : cs <- get
In the second argument of `($)', namely
`do { c : cs <- get;
put cs;
return $ fromAny c }'
In the second argument of `($)', namely
`flip fromConstrM (D.toConstr x)
$ do { c : cs <- get;
put cs;
return $ fromAny c }'
Failed to install cmdargs-0.3
Configuring primitive-0.3.1...
Building primitive-0.3.1...
Preprocessing library primitive-0.3.1...
[1 of 7] Compiling Data.Primitive.MachDeps ( Data/Primitive/MachDeps.hs, dist/build/Data/Primitive/MachDeps.o )
[2 of 7] Compiling Control.Monad.Primitive ( Control/Monad/Primitive.hs, dist/build/Control/Monad/Primitive.o )
Control/Monad/Primitive.hs:24:1: Warning:
Module `GHC.IOBase' is deprecated: use GHC.IO instead
[3 of 7] Compiling Data.Primitive.Types ( Data/Primitive/Types.hs, dist/build/Data/Primitive/Types.o )
Data/Primitive/Types.hs:57:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
[4 of 7] Compiling Data.Primitive.Array ( Data/Primitive/Array.hs, dist/build/Data/Primitive/Array.o )
Data/Primitive/Array.hs:112:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
Data/Primitive/Array.hs:117:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
[5 of 7] Compiling Data.Primitive.ByteArray ( Data/Primitive/ByteArray.hs, dist/build/Data/Primitive/ByteArray.o )
Data/Primitive/ByteArray.hs:203:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
Data/Primitive/ByteArray.hs:208:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
[6 of 7] Compiling Data.Primitive.Addr ( Data/Primitive/Addr.hs, dist/build/Data/Primitive/Addr.o )
[7 of 7] Compiling Data.Primitive ( Data/Primitive.hs, dist/build/Data/Primitive.o )
In-place registering primitive-0.3.1...
Running Haddock for primitive-0.3.1...
Running hscolour for primitive-0.3.1...
Preprocessing library primitive-0.3.1...
Preprocessing library primitive-0.3.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
dist/build/tmp-4776/Control/Monad/Primitive.hs:24:1: Warning:
Module `GHC.IOBase' is deprecated: use GHC.IO instead
dist/build/tmp-4776/Data/Primitive/Types.hs:57:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-4776/Data/Primitive/Array.hs:112:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-4776/Data/Primitive/Array.hs:117:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-4776/Data/Primitive/ByteArray.hs:203:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
dist/build/tmp-4776/Data/Primitive/ByteArray.hs:208:18: Warning:
In the use of `mkNorepType' (imported from Data.Data):
Deprecated: "Use mkNoRepType instead"
Haddock coverage:
3% ( 1 / 33) in 'Data.Primitive.MachDeps'
Warning: Control.Monad.Primitive: We do not support associated types in instances yet. These instances are affected:
Control.Monad.Primitive.PrimMonad GHC.Types.IO, Control.Monad.Primitive.PrimMonad (GHC.ST.ST s)
71% ( 10 / 14) in 'Control.Monad.Primitive'
100% ( 3 / 3) in 'Data.Primitive.Types'
100% ( 11 / 11) in 'Data.Primitive.Array'
73% ( 16 / 22) in 'Data.Primitive.ByteArray'
80% ( 8 / 10) in 'Data.Primitive.Addr'
100% ( 7 / 7) in 'Data.Primitive'
Documentation created: dist/doc/html/primitive/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/primitive-0.3.1/ghc-7.6.3
Registering primitive-0.3.1...
Installed primitive-0.3.1
Configuring PrimitiveArray-0.0.2.2...
Building PrimitiveArray-0.0.2.2...
Preprocessing library PrimitiveArray-0.0.2.2...
[1 of 3] Compiling Data.PrimitiveArray.Internal ( Data/PrimitiveArray/Internal.hs, dist/build/Data/PrimitiveArray/Internal.o )
[2 of 3] Compiling Data.PrimitiveArray ( Data/PrimitiveArray.hs, dist/build/Data/PrimitiveArray.o )
[3 of 3] Compiling Data.PrimitiveArray.Ix ( Data/PrimitiveArray/Ix.hs, dist/build/Data/PrimitiveArray/Ix.o )
Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
In-place registering PrimitiveArray-0.0.2.2...
Running Haddock for PrimitiveArray-0.0.2.2...
Running hscolour for PrimitiveArray-0.0.2.2...
Preprocessing library PrimitiveArray-0.0.2.2...
Preprocessing library PrimitiveArray-0.0.2.2...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
dist/build/tmp-4776/Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
dist/build/tmp-4776/Data/PrimitiveArray/Ix.hs:27:24: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxP'
In the definition of data constructor `PaIxP'
In the data instance declaration for `PrimArray'
In the instance declaration for `PrimArrayOps a b'
dist/build/tmp-4776/Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the first argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
dist/build/tmp-4776/Data/PrimitiveArray/Ix.hs:48:32: Warning:
Ignoring unusable UNPACK pragma on the second argument of `PaIxPM'
In the definition of data constructor `PaIxPM'
In the data instance declaration for `PrimArrayM'
In the instance declaration for `PrimArrayOpsM a b (ST s)'
Haddock coverage:
100% ( 3 / 3) in 'Data.PrimitiveArray.Internal'
71% ( 5 / 7) in 'Data.PrimitiveArray'
Warning: Data.PrimitiveArray.Ix: We do not support associated types in instances yet. These instances are affected:
(GHC.Enum.Bounded a, GHC.Arr.Ix a, Data.Primitive.Types.Prim b) =>
Data.PrimitiveArray.PrimArrayOps a b, (GHC.Enum.Bounded a, GHC.Arr.Ix a, Data.Primitive.Types.Prim b) =>
Data.PrimitiveArray.PrimArrayOpsM a b (GHC.ST.ST s)
100% ( 1 / 1) in 'Data.PrimitiveArray.Ix'
Documentation created: dist/doc/html/PrimitiveArray/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/PrimitiveArray-0.0.2.2/ghc-7.6.3
Registering PrimitiveArray-0.0.2.2...
Installed PrimitiveArray-0.0.2.2
Configuring vector-0.7.1...
Building vector-0.7.1...
Preprocessing library vector-0.7.1...
[ 1 of 19] Compiling Data.Vector.Storable.Internal ( Data/Vector/Storable/Internal.hs, dist/build/Data/Vector/Storable/Internal.o )
[ 2 of 19] Compiling Data.Vector.Fusion.Util ( Data/Vector/Fusion/Util.hs, dist/build/Data/Vector/Fusion/Util.o )
[ 3 of 19] Compiling Data.Vector.Fusion.Stream.Size ( Data/Vector/Fusion/Stream/Size.hs, dist/build/Data/Vector/Fusion/Stream/Size.o )
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `*'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `abs'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `signum'
In the instance declaration for `Num Size'
[ 4 of 19] Compiling Data.Vector.Internal.Check ( Data/Vector/Internal/Check.hs, dist/build/Data/Vector/Internal/Check.o )
[ 5 of 19] Compiling Data.Vector.Fusion.Stream.Monadic ( Data/Vector/Fusion/Stream/Monadic.hs, dist/build/Data/Vector/Fusion/Stream/Monadic.o )
Loading package ghc-prim ... linking ... done.
Loading package integer-gmp ... linking ... done.
Loading package base ... linking ... done.
Loading package primitive-0.3.1 ... linking ... done.
[ 6 of 19] Compiling Data.Vector.Fusion.Stream ( Data/Vector/Fusion/Stream.hs, dist/build/Data/Vector/Fusion/Stream.o )
[ 7 of 19] Compiling Data.Vector.Generic.Mutable ( Data/Vector/Generic/Mutable.hs, dist/build/Data/Vector/Generic/Mutable.o )
[ 8 of 19] Compiling Data.Vector.Generic.Base ( Data/Vector/Generic/Base.hs, dist/build/Data/Vector/Generic/Base.o )
[ 9 of 19] Compiling Data.Vector.Generic.New ( Data/Vector/Generic/New.hs, dist/build/Data/Vector/Generic/New.o )
[10 of 19] Compiling Data.Vector.Generic ( Data/Vector/Generic.hs, dist/build/Data/Vector/Generic.o )
[11 of 19] Compiling Data.Vector.Primitive.Mutable ( Data/Vector/Primitive/Mutable.hs, dist/build/Data/Vector/Primitive/Mutable.o )
[12 of 19] Compiling Data.Vector.Primitive ( Data/Vector/Primitive.hs, dist/build/Data/Vector/Primitive.o )
[13 of 19] Compiling Data.Vector.Storable.Mutable ( Data/Vector/Storable/Mutable.hs, dist/build/Data/Vector/Storable/Mutable.o )
[14 of 19] Compiling Data.Vector.Storable ( Data/Vector/Storable.hs, dist/build/Data/Vector/Storable.o )
[15 of 19] Compiling Data.Vector.Unboxed.Base ( Data/Vector/Unboxed/Base.hs, dist/build/Data/Vector/Unboxed/Base.o )
Data/Vector/Unboxed/Base.hs:55:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
Data/Vector/Unboxed/Base.hs:58:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
[16 of 19] Compiling Data.Vector.Unboxed ( Data/Vector/Unboxed.hs, dist/build/Data/Vector/Unboxed.o )
[17 of 19] Compiling Data.Vector.Unboxed.Mutable ( Data/Vector/Unboxed/Mutable.hs, dist/build/Data/Vector/Unboxed/Mutable.o )
[18 of 19] Compiling Data.Vector.Mutable ( Data/Vector/Mutable.hs, dist/build/Data/Vector/Mutable.o )
[19 of 19] Compiling Data.Vector ( Data/Vector.hs, dist/build/Data/Vector.o )
In-place registering vector-0.7.1...
Running Haddock for vector-0.7.1...
Running hscolour for vector-0.7.1...
Preprocessing library vector-0.7.1...
Preprocessing library vector-0.7.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `*'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `abs'
In the instance declaration for `Num Size'
Data/Vector/Fusion/Stream/Size.hs:25:10: Warning:
No explicit method or default declaration for `signum'
In the instance declaration for `Num Size'
Data/Vector/Unboxed/Base.hs:55:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
Data/Vector/Unboxed/Base.hs:58:27: Warning:
In the use of `mkTyCon' (imported from Data.Typeable):
Deprecated: "either derive Typeable, or use mkTyCon3 instead"
Haddock coverage:
33% ( 1 / 3) in 'Data.Vector.Storable.Internal'
100% ( 5 / 5) in 'Data.Vector.Fusion.Util'
100% ( 6 / 6) in 'Data.Vector.Fusion.Stream.Size'
10% ( 1 / 10) in 'Data.Vector.Internal.Check'
83% (103 /124) in 'Data.Vector.Fusion.Stream.Monadic'
84% ( 87 /103) in 'Data.Vector.Fusion.Stream'
67% ( 45 / 67) in 'Data.Vector.Generic.Mutable'
100% ( 3 / 3) in 'Data.Vector.Generic.Base'
5% ( 1 / 19) in 'Data.Vector.Generic.New'
93% (210 /227) in 'Data.Vector.Generic'
77% ( 41 / 53) in 'Data.Vector.Primitive.Mutable'
Warning: Data.Vector.Primitive: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
97% (183 /189) in 'Data.Vector.Primitive'
80% ( 47 / 59) in 'Data.Vector.Storable.Mutable'
Warning: Data.Vector.Storable: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
97% (190 /196) in 'Data.Vector.Storable'
Warning: Data.Vector.Unboxed.Base: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable, MVector, Vector
17% ( 1 / 6) in 'Data.Vector.Unboxed.Base'
96% (199 /208) in 'Data.Vector.Unboxed'
78% ( 50 / 64) in 'Data.Vector.Unboxed.Mutable'
77% ( 40 / 52) in 'Data.Vector.Mutable'
Warning: Data.Vector: Instances of type and data families are not yet supported. Instances of the following families will be filtered out:
Mutable
94% (197 /210) in 'Data.Vector'
Documentation created: dist/doc/html/vector/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/vector-0.7.1/ghc-7.6.3
Registering vector-0.7.1...
Installed vector-0.7.1
Configuring Biobase-0.0.2.1...
Building Biobase-0.0.2.1...
Preprocessing library Biobase-0.0.2.1...
[1 of 5] Compiling Biobase.RNA ( Biobase/RNA.hs, dist/build/Biobase/RNA.o )
[2 of 5] Compiling Biobase.Structure ( Biobase/Structure.hs, dist/build/Biobase/Structure.o )
[3 of 5] Compiling Biobase.Structure.DotBracket ( Biobase/Structure/DotBracket.hs, dist/build/Biobase/Structure/DotBracket.o )
[4 of 5] Compiling Biobase.Structure.Shapes ( Biobase/Structure/Shapes.hs, dist/build/Biobase/Structure/Shapes.o )
[5 of 5] Compiling Biobase.Constants ( Biobase/Constants.hs, dist/build/Biobase/Constants.o )
In-place registering Biobase-0.0.2.1...
Running Haddock for Biobase-0.0.2.1...
Running hscolour for Biobase-0.0.2.1...
Preprocessing library Biobase-0.0.2.1...
Preprocessing library Biobase-0.0.2.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0
Haddock coverage:
19% ( 6 / 32) in 'Biobase.RNA'
80% ( 4 / 5) in 'Biobase.Structure'
67% ( 2 / 3) in 'Biobase.Structure.DotBracket'
12% ( 1 / 8) in 'Biobase.Structure.Shapes'
67% ( 4 / 6) in 'Biobase.Constants'
Documentation created: dist/doc/html/Biobase/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/Biobase-0.0.2.1/ghc-7.6.3
Registering Biobase-0.0.2.1...
Installed Biobase-0.0.2.1
Downloading BiobaseInfernal-0.0.2.1...
Configuring BiobaseInfernal-0.0.2.1...
Building BiobaseInfernal-0.0.2.1...
Preprocessing library BiobaseInfernal-0.0.2.1...
[1 of 5] Compiling Biobase.Infernal.Stockholm ( Biobase/Infernal/Stockholm.hs, dist/build/Biobase/Infernal/Stockholm.o )
[2 of 5] Compiling Biobase.Infernal.Stockholm.Import ( Biobase/Infernal/Stockholm/Import.hs, dist/build/Biobase/Infernal/Stockholm/Import.o )
[3 of 5] Compiling Biobase.Infernal.CM ( Biobase/Infernal/CM.hs, dist/build/Biobase/Infernal/CM.o )
[4 of 5] Compiling Biobase.Infernal.CM.Import ( Biobase/Infernal/CM/Import.hs, dist/build/Biobase/Infernal/CM/Import.o )
[5 of 5] Compiling Biobase.Infernal.CM.Export ( Biobase/Infernal/CM/Export.hs, dist/build/Biobase/Infernal/CM/Export.o )
In-place registering BiobaseInfernal-0.0.2.1...
Running Haddock for BiobaseInfernal-0.0.2.1...
Running hscolour for BiobaseInfernal-0.0.2.1...
Preprocessing library BiobaseInfernal-0.0.2.1...
Preprocessing library BiobaseInfernal-0.0.2.1...
Warning: The documentation for the following packages are not installed. No
links will be generated to these packages: rts-1.0, mtl-2.1.2, parsec-3.1.3,
text-0.11.2.3, transformers-0.3.0.0
Haddock coverage:
100% ( 2 / 2) in 'Biobase.Infernal.Stockholm'
33% ( 1 / 3) in 'Biobase.Infernal.Stockholm.Import'
68% ( 23 / 34) in 'Biobase.Infernal.CM'
33% ( 1 / 3) in 'Biobase.Infernal.CM.Import'
100% ( 5 / 5) in 'Biobase.Infernal.CM.Export'
Warning: Biobase.Infernal.CM.Import: could not find link destinations for:
Text.Parsec.Error.ParseError
Documentation created: dist/doc/html/BiobaseInfernal/index.html
Installing library in
/srv/hackage/var/build/tmp-install/lib/BiobaseInfernal-0.0.2.1/ghc-7.6.3
Registering BiobaseInfernal-0.0.2.1...
Installed BiobaseInfernal-0.0.2.1
cabal: Error: some packages failed to install:
CMCompare-0.0.1.1 depends on cmdargs-0.3 which failed to install.
cmdargs-0.3 failed during the building phase. The exception was:
ExitFailure 1
Test log
No test log was submitted for this report.