| Safe Haskell | Safe-Inferred |
|---|---|
| Language | Haskell98 |
Bio.ClustalParser
Description
Parse Clustal output
- parseClustalAlignment :: String -> Either ParseError ClustalAlignment
- readClustalAlignment :: String -> IO (Either ParseError ClustalAlignment)
- parseClustalSummary :: String -> Either ParseError ClustalSummary
- readClustalSummary :: String -> IO (Either ParseError ClustalSummary)
- data ClustalSummary = ClustalSummary {}
- data SequenceParameters = SequenceParameters {}
- data PairwiseAlignmentSummary = PairwiseAlignmentSummary {}
- data GroupSummary = GroupSummary {}
- data ClustalAlignment = ClustalAlignment {}
- data ClustalAlignmentEntry = ClustalAlignmentEntry {}
- data ClustalAlignmentSlice = ClustalAlignmentSlice {}
- data ClustalAlignmentEntrySlice = ClustalAlignmentEntrySlice {}
- data ClustalGuideTree = ClustalGuideTree {}
- data ClustalGuideTreeEntry = ClustalGuideTreeEntry {}
Documentation
parseClustalAlignment :: String -> Either ParseError ClustalAlignment Source
Parse Clustal alignment (.aln) from String
readClustalAlignment :: String -> IO (Either ParseError ClustalAlignment) Source
Parse Clustal alignment (.aln) from filehandle
parseClustalSummary :: String -> Either ParseError ClustalSummary Source
Parse Clustal summary (printed to STDOUT) from String
readClustalSummary :: String -> IO (Either ParseError ClustalSummary) Source
Parse Clustal summary (printed to STDOUT) from file
data ClustalSummary Source
Data type for clustal summary, containing information about the alignment process, usually printed to STDOUT
Constructors
| ClustalSummary | |
Instances
data PairwiseAlignmentSummary Source
Constructors
| PairwiseAlignmentSummary | |
Fields | |
data ClustalAlignment Source
Data structure for Clustal alignment format
Constructors
| ClustalAlignment | |
Fields | |
Instances
data ClustalAlignmentEntrySlice Source
Constructors
| ClustalAlignmentEntrySlice | |
Fields | |