PrimitiveArray: Efficient multidimensional arrays

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Warnings:

generalized Algebraic Dynamic Programming

This library provides efficient multidimensional arrays. Import Data.PrimitiveArray for indices, lenses, and arrays.

For generalized ADP users, the library also provides the machinary to fill tables in the correct order required by usual CYK-style parsers, or regular grammars (used e.g. in alignment algorithms). This means that unless your grammar requires a strange order in which parsing is to be performed, it will mostly "just work".

In general operations do not perform bounds-checking or other sanity-checking and are aimed towards efficiency as much as possible. Users (like ADPfusion) should perform their own bounds-checking, outside of code that performs "loop-like" operations.


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Properties

Versions 0.0.2.1, 0.0.2.2, 0.0.3.0, 0.0.3.1, 0.0.4.0, 0.1.1.2, 0.2.0.0, 0.2.1.0, 0.2.1.1, 0.2.2.0, 0.3.0.0, 0.4.0.0, 0.4.0.1, 0.5.0.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.6.0.0, 0.6.1.0, 0.7.0.0, 0.7.0.1, 0.7.1.0, 0.8.0.0, 0.8.0.1, 0.9.0.0, 0.9.1.0, 0.9.1.1, 0.10.0.0, 0.10.1.0, 0.10.1.0, 0.10.1.1
Change log changelog.md
Dependencies aeson (>=0.8), base (>=4.7 && <5.0), binary (>=0.7), bits (>=0.4), cereal (>=0.4), cereal-vector (>=0.2), containers, deepseq (>=1.3), DPutils (==0.1.0.*), hashable (>=1.2), hashtables (>=1.2), lens (>=4.0), log-domain (>=0.10), mtl (>=2.0), OrderedBits (==0.0.2.*), primitive (>=0.5.4), QuickCheck (>=2.7), smallcheck (>=1.1), text (>=1.0), unordered-containers (>=0.2), vector (>=0.11), vector-algorithms (>=0.8), vector-binary-instances (>=0.2), vector-th-unbox (>=0.2) [details]
License BSD-3-Clause
Copyright Christian Hoener zu Siederdissen, 2011-2021
Author Christian Hoener zu Siederdissen, 2011-2021
Maintainer choener@bioinf.uni-leipzig.de
Category Data
Home page https://github.com/choener/PrimitiveArray
Bug tracker https://github.com/choener/PrimitiveArray/issues
Source repo head: git clone git://github.com/choener/PrimitiveArray
Uploaded by ChristianHoener at 2021-05-31T09:46:23Z

Modules

[Index]

Flags

NameDescriptionDefaultType
debug

Enable bounds checking and various other debug operations at the cost of a significant performance penalty.

DisabledManual
debugoutput

Enable debug output, which spams the screen full of index information

DisabledManual
llvm

use llvm

DisabledManual
debugdump

Enable dumping intermediate / core files

DisabledManual
dump-core

Dump HTML for the core generated by GHC during compilation

DisabledManual

Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info

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Readme for PrimitiveArray-0.10.1.0

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Build Status

PrimitiveArray

generalized Algebraic Dynamic Programming Homepage

PrimitiveArray provides operations on multi-dimensional arrays. Internally, the representation is based on the vector library, while the multi-dimensional indexing follows repa.

Primitive arrays are designed to be used together with ADPfusion.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/