Build #1 for RNAlien-1.3.0
Package | RNAlien-1.3.0 |
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Install | BuildFailed |
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Docs | NotTried |
Tests | NotTried |
Time submitted | 2017-01-20 09:54:11.111216 UTC |
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Compiler | ghc-8.0.1.20161018 |
OS | linux |
Arch | x86_64 |
Dependencies | BlastHTTP-1.2.1, ClustalParser-1.2.0, EntrezHTTP-1.0.3, HTTP-4000.3.4, Taxonomy-1.0.2, ViennaRNAParser-1.3.2, aeson-1.1.0.0, base-4.9.0.0, biocore-0.3.1, biofasta-0.0.3, blastxml-0.3.2, bytestring-0.10.8.1, cassava-0.1.0.1, cmdargs-0.10.14, containers-0.5.7.1, directory-1.2.6.2, edit-distance-0.2.2.1, either-unwrap-1.1, filepath-1.4.1.0, hierarchical-clustering-0.4.6, http-conduit-2.2.3, http-types-0.9.1, hxt-9.3.1.16, matrix-0.3.5.0, network-2.6.3.1, parsec-3.1.11, process-1.4.2.0, pureMD5-2.1.3, random-1.1, text-1.2.2.1, text-metrics-0.2.0, transformers-0.5.2.0, vector-0.12.0.0, base-4.9.0.0, cmdargs-0.10.14, either-unwrap-1.1, base-4.9.0.0, biocore-0.3.1, biofasta-0.0.3, cmdargs-0.10.14, containers-0.5.7.1, directory-1.2.6.2, either-unwrap-1.1, filepath-1.4.1.0, random-1.1, time-1.6.0.1, ViennaRNAParser-1.3.2, base-4.9.0.0, biocore-0.3.1, biofasta-0.0.3, bytestring-0.10.8.1, cassava-0.1.0.1, cmdargs-0.10.14, directory-1.2.6.2, either-unwrap-1.1, filepath-1.4.1.0, process-1.4.2.0, split-0.2.3.1, vector-0.12.0.0, base-4.9.0.0, cmdargs-0.10.14, either-unwrap-1.1, base-4.9.0.0, bytestring-0.10.8.1, cmdargs-0.10.14, either-unwrap-1.1, text-1.2.2.1 |
Flags | none |
Code Coverage
No Code Coverage was submitted for this report.
Build log
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Resolving dependencies... Configuring base64-bytestring-1.0.0.1... Configuring base-compat-0.9.1... Building base64-bytestring-1.0.0.1... Building base-compat-0.9.1... Installed base64-bytestring-1.0.0.1 Configuring byteable-0.1.1... Building byteable-0.1.1... Configuring cereal-0.5.4.0... Installed base-compat-0.9.1 Building cereal-0.5.4.0... Configuring cmdargs-0.10.14... Installed byteable-0.1.1 Building cmdargs-0.10.14... Configuring colour-2.3.3... Installed cereal-0.5.4.0 Building colour-2.3.3... Configuring data-default-class-0.1.2.0... Installed colour-2.3.3 Building data-default-class-0.1.2.0... Configuring either-unwrap-1.1... Installed data-default-class-0.1.2.0 Building either-unwrap-1.1... Configuring dlist-0.8.0.2... Installed either-unwrap-1.1 Building dlist-0.8.0.2... Configuring entropy-0.3.7... Installed dlist-0.8.0.2 Configuring fgl-5.5.3.0... Installed cmdargs-0.10.14 Building fgl-5.5.3.0... Building entropy-0.3.7... Configuring hierarchical-clustering-0.4.6... Installed entropy-0.3.7 Building hierarchical-clustering-0.4.6... Configuring hourglass-0.2.10... Installed hierarchical-clustering-0.4.6 Building hourglass-0.2.10... Configuring hxt-charproperties-9.2.0.1... Installed fgl-5.5.3.0 Building hxt-charproperties-9.2.0.1... Configuring loop-0.3.0... Installed hourglass-0.2.10 Configuring integer-logarithms-1... Installed hxt-charproperties-9.2.0.1 Building loop-0.3.0... Building integer-logarithms-1... Configuring mtl-2.2.1... Installed loop-0.3.0 Building mtl-2.2.1... Configuring memory-0.14.1... Installed integer-logarithms-1 Building memory-0.14.1... Configuring old-locale-1.0.0.7... Installed mtl-2.2.1 Building old-locale-1.0.0.7... Configuring network-2.6.3.1... Installed old-locale-1.0.0.7 Configuring parallel-3.2.1.0... Installed memory-0.14.1 Building parallel-3.2.1.0... Building network-2.6.3.1... Configuring primitive-0.6.2.0... Installed parallel-3.2.1.0 Building primitive-0.6.2.0... Configuring random-1.1... Installed network-2.6.3.1 Building random-1.1... Configuring stm-2.4.4.1... Installed primitive-0.6.2.0 Building stm-2.4.4.1... Configuring split-0.2.3.1... Installed random-1.1 Building split-0.2.3.1... Configuring time-locale-compat-0.1.1.3... Installed stm-2.4.4.1 Building time-locale-compat-0.1.1.3... Configuring text-1.2.2.1... Installed time-locale-compat-0.1.1.3 Configuring transformers-compat-0.5.1.4... Installed split-0.2.3.1 Building text-1.2.2.1... Building transformers-compat-0.5.1.4... Configuring zlib-0.6.1.2... Installed transformers-compat-0.5.1.4 Building zlib-0.6.1.2... Installed zlib-0.6.1.2 Configuring pem-0.2.2... Building pem-0.2.2... Configuring hxt-unicode-9.0.2.4... Installed pem-0.2.2 Building hxt-unicode-9.0.2.4... Configuring asn1-types-0.3.2... Installed hxt-unicode-9.0.2.4 Building asn1-types-0.3.2... Configuring cryptonite-0.21... Installed text-1.2.2.1 Building cryptonite-0.21... Configuring socks-0.5.5... Installed asn1-types-0.3.2 Building socks-0.5.5... Configuring vector-0.12.0.0... Installed socks-0.5.5 Building vector-0.12.0.0... Configuring edit-distance-0.2.2.1... Installed vector-0.12.0.0 Building edit-distance-0.2.2.1... Configuring async-2.1.1... Installed edit-distance-0.2.2.1 Building async-2.1.1... Configuring exceptions-0.8.3... Installed cryptonite-0.21 Building exceptions-0.8.3... Configuring mmorph-1.0.9... Installed async-2.1.1 Building mmorph-1.0.9... Configuring tagged-0.8.5... Installed mmorph-1.0.9 Configuring transformers-base-0.4.4... Installed exceptions-0.8.3 Building tagged-0.8.5... Building transformers-base-0.4.4... Installed transformers-base-0.4.4 Configuring hashable-1.2.5.0... Building hashable-1.2.5.0... Configuring blaze-builder-0.4.0.2... Installed tagged-0.8.5 Building blaze-builder-0.4.0.2... Configuring mime-types-0.1.0.7... Installed hashable-1.2.5.0 Building mime-types-0.1.0.7... Configuring parsec-3.1.11... Installed blaze-builder-0.4.0.2 Building parsec-3.1.11... Configuring polyparse-1.12... Installed mime-types-0.1.0.7 Building polyparse-1.12... Configuring system-filepath-0.4.13.4... Installed parsec-3.1.11 Building system-filepath-0.4.13.4... Configuring tagsoup-0.14... Installed system-filepath-0.4.13.4 Configuring text-metrics-0.2.0... Installed polyparse-1.12 Building tagsoup-0.14... Building text-metrics-0.2.0... Configuring wl-pprint-text-1.1.0.4... Installed text-metrics-0.2.0 Building wl-pprint-text-1.1.0.4... Configuring asn1-encoding-0.9.4... Installed wl-pprint-text-1.1.0.4 Building asn1-encoding-0.9.4... Configuring matrix-0.3.5.0... Installed asn1-encoding-0.9.4 Building matrix-0.3.5.0... Configuring monad-control-1.0.1.0... Installed tagsoup-0.14 Building monad-control-1.0.1.0... Configuring temporary-1.2.0.4... Installed monad-control-1.0.1.0 Building temporary-1.2.0.4... Installed temporary-1.2.0.4 Configuring crypto-api-0.13.2... Building crypto-api-0.13.2... Configuring unordered-containers-0.2.7.2... Installed crypto-api-0.13.2 Building unordered-containers-0.2.7.2... Configuring scientific-0.3.4.10... Installed matrix-0.3.5.0 Building scientific-0.3.4.10... Configuring case-insensitive-1.2.0.7... Installed scientific-0.3.4.10 Building case-insensitive-1.2.0.7... Configuring uuid-types-1.0.3... Installed unordered-containers-0.2.7.2 Configuring cookie-0.4.2.1... Installed case-insensitive-1.2.0.7 Building uuid-types-1.0.3... Building cookie-0.4.2.1... Configuring ParsecTools-0.0.2.0... Installed cookie-0.4.2.1 Building ParsecTools-0.0.2.0... Configuring streaming-commons-0.1.16... Installed uuid-types-1.0.3 Building streaming-commons-0.1.16... Configuring ClustalParser-1.2.0... Installed ParsecTools-0.0.2.0 Building ClustalParser-1.2.0... Configuring hxt-regex-xmlschema-9.2.0.3... Installed ClustalParser-1.2.0 Building hxt-regex-xmlschema-9.2.0.3... Configuring network-uri-2.6.1.0... Installed streaming-commons-0.1.16 Building network-uri-2.6.1.0... Configuring stringable-0.1.3... Installed hxt-regex-xmlschema-9.2.0.3 Building stringable-0.1.3... Configuring asn1-parse-0.9.4... Installed network-uri-2.6.1.0 Building asn1-parse-0.9.4... Configuring lifted-base-0.2.3.8... Installed asn1-parse-0.9.4 Configuring graphviz-2999.18.1.2... Installed stringable-0.1.3 Building lifted-base-0.2.3.8... Building graphviz-2999.18.1.2... Installed lifted-base-0.2.3.8 Configuring pureMD5-2.1.3... Building pureMD5-2.1.3... Installed pureMD5-2.1.3 Configuring http-types-0.9.1... Building http-types-0.9.1... Configuring attoparsec-0.13.1.0... Installed http-types-0.9.1 Building attoparsec-0.13.1.0... Configuring ViennaRNAParser-1.3.2... Installed attoparsec-0.13.1.0 Building ViennaRNAParser-1.3.2... Configuring HTTP-4000.3.4... Installed ViennaRNAParser-1.3.2 Building HTTP-4000.3.4... Configuring x509-1.6.5... Installed HTTP-4000.3.4 Building x509-1.6.5... Configuring hxt-9.3.1.16... Installed x509-1.6.5 Building hxt-9.3.1.16... Configuring biocore-0.3.1... Installed graphviz-2999.18.1.2 Building biocore-0.3.1... Configuring resourcet-1.1.9... Installed biocore-0.3.1 Building resourcet-1.1.9... Installed resourcet-1.1.9 Configuring http-client-0.5.5... Building http-client-0.5.5... Configuring cassava-0.1.0.1... Installed http-client-0.5.5 Building cassava-0.1.0.1... Configuring aeson-1.1.0.0... Installed cassava-0.1.0.1 Building aeson-1.1.0.0... Configuring x509-store-1.6.2... Installed hxt-9.3.1.16 Building x509-store-1.6.2... Configuring biofasta-0.0.3... Installed x509-store-1.6.2 Building biofasta-0.0.3... Configuring conduit-1.2.8... Installed biofasta-0.0.3 Building conduit-1.2.8... Configuring blastxml-0.3.2... Installed conduit-1.2.8 Building blastxml-0.3.2... Installed blastxml-0.3.2 Configuring x509-system-1.6.4... Building x509-system-1.6.4... Configuring x509-validation-1.6.5... Installed aeson-1.1.0.0 Building x509-validation-1.6.5... Configuring conduit-extra-1.1.15... Installed x509-system-1.6.4 Building conduit-extra-1.1.15... Configuring Taxonomy-1.0.2... Installed x509-validation-1.6.5 Building Taxonomy-1.0.2... Installed conduit-extra-1.1.15 Configuring tls-1.3.9... Building tls-1.3.9... Installed Taxonomy-1.0.2 Installed tls-1.3.9 Configuring connection-0.2.6... Building connection-0.2.6... Installed connection-0.2.6 Configuring http-client-tls-0.3.3.1... Building http-client-tls-0.3.3.1... Installed http-client-tls-0.3.3.1 Configuring http-conduit-2.2.3... Building http-conduit-2.2.3... Installed http-conduit-2.2.3 Configuring BlastHTTP-1.2.1... Configuring EntrezHTTP-1.0.3... Building BlastHTTP-1.2.1... Building EntrezHTTP-1.0.3... Installed BlastHTTP-1.2.1 Installed EntrezHTTP-1.0.3 Downloading RNAlien-1.3.0... Configuring RNAlien-1.3.0... Building RNAlien-1.3.0... Failed to install RNAlien-1.3.0 Build log ( /home/builder/.cabal/logs/RNAlien-1.3.0.log ): cabal: Entering directory '/tmp/cabal-tmp-13031/RNAlien-1.3.0' Configuring RNAlien-1.3.0... Building RNAlien-1.3.0... Preprocessing library RNAlien-1.3.0... [1 of 4] Compiling Bio.RNAlienData ( src/Bio/RNAlienData.hs, dist/build/Bio/RNAlienData.o ) [2 of 4] Compiling Bio.RNAcentralHTTP ( src/Bio/RNAcentralHTTP.hs, dist/build/Bio/RNAcentralHTTP.o ) [3 of 4] Compiling Bio.InfernalParser ( src/Bio/InfernalParser.hs, dist/build/Bio/InfernalParser.o ) [4 of 4] Compiling Bio.RNAlienLibrary ( src/Bio/RNAlienLibrary.hs, dist/build/Bio/RNAlienLibrary.o ) src/Bio/RNAlienLibrary.hs:1050:59: error: • Couldn't match expected type ‘L.ByteString -> Either String (V.Vector [String])’ with actual type ‘Either String (V.Vector a0)’ • The function ‘decodeWith’ is applied to three arguments, but its type ‘DecodeOptions -> L.ByteString -> Either String (V.Vector a0)’ has only two In the first argument of ‘fromRight’, namely ‘(decodeWith myOptions NoHeader (L.pack singlespaceCMcompare) :: Either String (V.Vector [String]))’ In the first argument of ‘V.toList’, namely ‘(fromRight (decodeWith myOptions NoHeader (L.pack singlespaceCMcompare) :: Either String (V.Vector [String])))’ src/Bio/RNAlienLibrary.hs:1050:80: error: Data constructor not in scope: NoHeader :: L.ByteString cabal: Leaving directory '/tmp/cabal-tmp-13031/RNAlien-1.3.0' cabal: Error: some packages failed to install: RNAlien-1.3.0 failed during the building phase. The exception was: ExitFailure 1
Test log
No test log was submitted for this report.