Bio.StockholmData

Datastructures for Stockholm alignments

Documentation

data StockholmAlignment

Data structure for a Stockholm format alignment

Constructors

StockholmAlignment

Fields

• version :: Text
• fileAnnotations :: [AnnotationEntry]
• columnAnnotations :: [AnnotationEntry]
• sequenceEntries :: [SequenceEntry]

Instances

Eq StockholmAlignment

Methods

(==) :: StockholmAlignment -> StockholmAlignment -> Bool

(/=) :: StockholmAlignment -> StockholmAlignment -> Bool

Show StockholmAlignment

Methods

showsPrec :: Int -> StockholmAlignment -> ShowS

show :: StockholmAlignment -> String

showList :: [StockholmAlignment] -> ShowS

data SequenceEntry

Constructors

SequenceEntry

Fields

• sequenceId :: Text
• entrySequence :: Text
• sequenceAnnotation :: [AnnotationEntry]
• residueAnnotation :: [AnnotationEntry]

Instances

Eq SequenceEntry

Methods

(==) :: SequenceEntry -> SequenceEntry -> Bool

(/=) :: SequenceEntry -> SequenceEntry -> Bool

Show SequenceEntry

Methods

showsPrec :: Int -> SequenceEntry -> ShowS

show :: SequenceEntry -> String

showList :: [SequenceEntry] -> ShowS

data AnnotationEntry

Constructors

AnnotationEntry

Fields

• tag :: Text
• annotation :: Text

Instances

Eq AnnotationEntry

Methods

(==) :: AnnotationEntry -> AnnotationEntry -> Bool

(/=) :: AnnotationEntry -> AnnotationEntry -> Bool

Show AnnotationEntry

Methods

showsPrec :: Int -> AnnotationEntry -> ShowS

show :: AnnotationEntry -> String

showList :: [AnnotationEntry] -> ShowS

data StockholmToken

Constructors

TokFileA

Fields

• fTag :: Text
• fInfo :: Text

TokColA

Fields

• cTag :: Text
• cInfo :: Text

TokResA

Fields

• rId :: Text
• rTag :: Text
• rInfo :: Text

TokSeqA

Fields

• aId :: Text
• aTag :: Text
• aInfo :: Text

TokSeq

Fields

• sId :: Text
• sSeq :: Text

Instances

Eq StockholmToken

Methods

(==) :: StockholmToken -> StockholmToken -> Bool

(/=) :: StockholmToken -> StockholmToken -> Bool

Show StockholmToken

Methods

showsPrec :: Int -> StockholmToken -> ShowS

show :: StockholmToken -> String

showList :: [StockholmToken] -> ShowS