Safe Haskell	Safe
Language	Haskell98

Biobase.StockholmAlignment.Types

Description

Datastructures for Stockholm alignments

Synopsis

Documentation

Data structure for a Stockholm format alignment

Constructors

StockholmAlignment
Fields version :: Text fileAnnotations :: [AnnotationEntry] columnAnnotations :: [AnnotationEntry] sequenceEntries :: [SequenceEntry]

Instances

Eq StockholmAlignment Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods (==) :: StockholmAlignment -> StockholmAlignment -> Bool # (/=) :: StockholmAlignment -> StockholmAlignment -> Bool #
Show StockholmAlignment Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods showsPrec :: Int -> StockholmAlignment -> ShowS # show :: StockholmAlignment -> String # showList :: [StockholmAlignment] -> ShowS #

Constructors

SequenceEntry
Fields sequenceId :: Text entrySequence :: Text sequenceAnnotation :: [AnnotationEntry] residueAnnotation :: [AnnotationEntry]

Instances

Eq SequenceEntry Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods (==) :: SequenceEntry -> SequenceEntry -> Bool # (/=) :: SequenceEntry -> SequenceEntry -> Bool #
Show SequenceEntry Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods showsPrec :: Int -> SequenceEntry -> ShowS # show :: SequenceEntry -> String # showList :: [SequenceEntry] -> ShowS #

Constructors

AnnotationEntry
Fields tag :: Text annotation :: Text

Instances

Eq AnnotationEntry Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods (==) :: AnnotationEntry -> AnnotationEntry -> Bool # (/=) :: AnnotationEntry -> AnnotationEntry -> Bool #
Show AnnotationEntry Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods showsPrec :: Int -> AnnotationEntry -> ShowS # show :: AnnotationEntry -> String # showList :: [AnnotationEntry] -> ShowS #

Constructors

TokFileA
Fields fTag :: Text fInfo :: Text
TokColA
Fields cTag :: Text cInfo :: Text
TokResA
Fields rId :: Text rTag :: Text rInfo :: Text
TokSeqA
Fields aId :: Text aTag :: Text aInfo :: Text
TokSeq
Fields sId :: Text sSeq :: Text

Instances

Eq StockholmToken Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods (==) :: StockholmToken -> StockholmToken -> Bool # (/=) :: StockholmToken -> StockholmToken -> Bool #
Show StockholmToken Source #
Instance details Defined in Biobase.StockholmAlignment.Types Methods showsPrec :: Int -> StockholmToken -> ShowS # show :: StockholmToken -> String # showList :: [StockholmToken] -> ShowS #