Bio.RNAplexData

This module contains a hierarchical data structure for RNAplex output For more information on RNAplex consult: http://www.bioinf.uni-leipzig.de/Software/RNAplex/

Documentation

data RNAplexInteraction

Data structure for individual interaction between a target and query nucleic acid seqence

Constructors

RNAplexInteraction

Fields

• targetIdentifier :: String
• queryIdentifier :: String
• plexSecondaryStructure :: String
• targetDuplexBegin :: Int
• targetDuplexEnd :: Int
• queryDuplexBegin :: Int
• queryDuplexEnd :: Int
• duplexEnergy :: Double
• duplexEnergyWithoutAccessiblity :: Maybe Double
• queryAccessiblity :: Maybe Double
• targetAccessibility :: Maybe Double
• prefilterStart :: Maybe Int
• prefilterStop :: Maybe Int
• prefilterEnergy :: Maybe Double

Instances

Eq RNAplexInteraction

Methods

(==) :: RNAplexInteraction -> RNAplexInteraction -> Bool

(/=) :: RNAplexInteraction -> RNAplexInteraction -> Bool

Show RNAplexInteraction

Methods

showsPrec :: Int -> RNAplexInteraction -> ShowS

show :: RNAplexInteraction -> String

showList :: [RNAplexInteraction] -> ShowS