Bio.RNAcodeData

This module contains a hierarchical data structure for RNAcode output For more information on RNAcode consult: http://wash.github.io/rnacode/

Documentation

data RNAcode

All elements of RNAcode output are contained in this datatype

Constructors

RNAcode

Fields

• rnacodeHits :: [RNAcodeHit]
• rcAlignmentNumber :: Maybe Int
• rcTime :: Maybe Double
• rcSampleNumber :: Maybe Int
• rcDelta :: Maybe Double
• rcBigOmega :: Maybe Double
• rcSmallOmega :: Maybe Double
• rcStopPenalty :: Maybe Double

Instances

Eq RNAcode

Methods

(==) :: RNAcode -> RNAcode -> Bool

(/=) :: RNAcode -> RNAcode -> Bool

Show RNAcode

Methods

showsPrec :: Int -> RNAcode -> ShowS

show :: RNAcode -> String

showList :: [RNAcode] -> ShowS

data RNAcodeHit

RNAcode Hit

Constructors

RNAcodeHit

Fields

• hss :: Int
• strand :: Char
• frame :: Int
• hitLength :: Int
• from :: Int
• to :: Int
• name :: String
• start :: Int
• end :: Int
• score :: Double
• pvalue :: Double

Instances

Eq RNAcodeHit

Methods

(==) :: RNAcodeHit -> RNAcodeHit -> Bool

(/=) :: RNAcodeHit -> RNAcodeHit -> Bool

Show RNAcodeHit

Methods

showsPrec :: Int -> RNAcodeHit -> ShowS

show :: RNAcodeHit -> String

showList :: [RNAcodeHit] -> ShowS