{-# language DeriveAnyClass #-}
{-# LANGUAGE DeriveGeneric #-}
{-# LANGUAGE OverloadedStrings #-}
{-# options_ghc -Wno-unused-imports -Wno-unused-top-binds #-}
module Algebra.Graph.IO.Datasets.LINQS.Cora (
stash
, sourceCoraGraphEdges, loadCoraGraph
, CoraDoc(..)
) where
import Control.Applicative (Alternative(..))
import Control.Monad (when, foldM)
import Control.Monad.IO.Class (MonadIO(..))
import GHC.Generics (Generic(..))
import GHC.Int (Int16)
import Data.Functor (($>))
import qualified Algebra.Graph as G (Graph, empty, overlay, edge)
import Data.Binary (Binary(..), encode, decode, encodeFile, decodeFileOrFail)
import qualified Data.Conduit.Serialization.Binary as CB (conduitDecode, conduitEncode, ParseError(..))
import Data.ByteString (ByteString)
import Data.ByteString.Char8 (unpack)
import Conduit (MonadUnliftIO(..), MonadResource, runResourceT)
import Data.Conduit (runConduit, ConduitT, (.|), yield, await)
import qualified Data.Conduit.Combinators as C (print, sourceFile, sinkFile, map, mapM, foldM, foldMap, foldl, foldMapM, mapWhile)
import Data.Sequence (Seq, (|>))
import qualified Data.Map as M (Map, singleton, lookup)
import System.Directory (createDirectoryIfMissing)
import Control.Monad.Catch (MonadThrow(..))
import System.FilePath ((</>), takeFileName, takeExtension)
import Network.HTTP.Simple (httpSource, getResponseBody, Response, Request, parseRequest, setRequestMethod)
import Text.Megaparsec (parse, parseTest, (<?>))
import Text.Megaparsec.Char (char)
import Text.Megaparsec.Char.Lexer (decimal)
import Text.Megaparsec.Error (errorBundlePretty)
import Control.Monad.Combinators (count)
import Control.Monad.Primitive (PrimMonad(..))
import Data.Conduit.Tar (Header(..), untarChunks, TarChunk, withEntries, FileInfo, filePath, withFileInfo, headerFileType, FileType(..), headerFilePath)
import qualified Data.Text as T (Text, unwords)
import qualified Data.Text.IO as T (readFile)
import Algebra.Graph.IO.Internal.Megaparsec (Parser, ParseE, symbol, lexeme, alphaNum)
import qualified Algebra.Graph.IO.Datasets.LINQS as DL (stash, sourceGraphEdges, loadGraph, restoreContent, CitesRow(..), ContentRow(..))
data CoraDoc = CB | GA | NN | PM | RL | RuL | Th deriving (CoraDoc -> CoraDoc -> Bool
forall a. (a -> a -> Bool) -> (a -> a -> Bool) -> Eq a
/= :: CoraDoc -> CoraDoc -> Bool
$c/= :: CoraDoc -> CoraDoc -> Bool
== :: CoraDoc -> CoraDoc -> Bool
$c== :: CoraDoc -> CoraDoc -> Bool
Eq, Int -> CoraDoc -> ShowS
[CoraDoc] -> ShowS
CoraDoc -> String
forall a.
(Int -> a -> ShowS) -> (a -> String) -> ([a] -> ShowS) -> Show a
showList :: [CoraDoc] -> ShowS
$cshowList :: [CoraDoc] -> ShowS
show :: CoraDoc -> String
$cshow :: CoraDoc -> String
showsPrec :: Int -> CoraDoc -> ShowS
$cshowsPrec :: Int -> CoraDoc -> ShowS
Show, Eq CoraDoc
CoraDoc -> CoraDoc -> Bool
CoraDoc -> CoraDoc -> Ordering
CoraDoc -> CoraDoc -> CoraDoc
forall a.
Eq a
-> (a -> a -> Ordering)
-> (a -> a -> Bool)
-> (a -> a -> Bool)
-> (a -> a -> Bool)
-> (a -> a -> Bool)
-> (a -> a -> a)
-> (a -> a -> a)
-> Ord a
min :: CoraDoc -> CoraDoc -> CoraDoc
$cmin :: CoraDoc -> CoraDoc -> CoraDoc
max :: CoraDoc -> CoraDoc -> CoraDoc
$cmax :: CoraDoc -> CoraDoc -> CoraDoc
>= :: CoraDoc -> CoraDoc -> Bool
$c>= :: CoraDoc -> CoraDoc -> Bool
> :: CoraDoc -> CoraDoc -> Bool
$c> :: CoraDoc -> CoraDoc -> Bool
<= :: CoraDoc -> CoraDoc -> Bool
$c<= :: CoraDoc -> CoraDoc -> Bool
< :: CoraDoc -> CoraDoc -> Bool
$c< :: CoraDoc -> CoraDoc -> Bool
compare :: CoraDoc -> CoraDoc -> Ordering
$ccompare :: CoraDoc -> CoraDoc -> Ordering
Ord, Int -> CoraDoc
CoraDoc -> Int
CoraDoc -> [CoraDoc]
CoraDoc -> CoraDoc
CoraDoc -> CoraDoc -> [CoraDoc]
CoraDoc -> CoraDoc -> CoraDoc -> [CoraDoc]
forall a.
(a -> a)
-> (a -> a)
-> (Int -> a)
-> (a -> Int)
-> (a -> [a])
-> (a -> a -> [a])
-> (a -> a -> [a])
-> (a -> a -> a -> [a])
-> Enum a
enumFromThenTo :: CoraDoc -> CoraDoc -> CoraDoc -> [CoraDoc]
$cenumFromThenTo :: CoraDoc -> CoraDoc -> CoraDoc -> [CoraDoc]
enumFromTo :: CoraDoc -> CoraDoc -> [CoraDoc]
$cenumFromTo :: CoraDoc -> CoraDoc -> [CoraDoc]
enumFromThen :: CoraDoc -> CoraDoc -> [CoraDoc]
$cenumFromThen :: CoraDoc -> CoraDoc -> [CoraDoc]
enumFrom :: CoraDoc -> [CoraDoc]
$cenumFrom :: CoraDoc -> [CoraDoc]
fromEnum :: CoraDoc -> Int
$cfromEnum :: CoraDoc -> Int
toEnum :: Int -> CoraDoc
$ctoEnum :: Int -> CoraDoc
pred :: CoraDoc -> CoraDoc
$cpred :: CoraDoc -> CoraDoc
succ :: CoraDoc -> CoraDoc
$csucc :: CoraDoc -> CoraDoc
Enum, forall x. Rep CoraDoc x -> CoraDoc
forall x. CoraDoc -> Rep CoraDoc x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cto :: forall x. Rep CoraDoc x -> CoraDoc
$cfrom :: forall x. CoraDoc -> Rep CoraDoc x
Generic, Get CoraDoc
[CoraDoc] -> Put
CoraDoc -> Put
forall t. (t -> Put) -> Get t -> ([t] -> Put) -> Binary t
putList :: [CoraDoc] -> Put
$cputList :: [CoraDoc] -> Put
get :: Get CoraDoc
$cget :: Get CoraDoc
put :: CoraDoc -> Put
$cput :: CoraDoc -> Put
Binary)
docClassP :: Parser CoraDoc
docClassP :: Parser CoraDoc
docClassP =
(Text -> Parser Text
symbol Text
"Case_Based" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
CB) forall (f :: * -> *) a. Alternative f => f a -> f a -> f a
<|>
(Text -> Parser Text
symbol Text
"Genetic_Algorithms" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
GA) forall (f :: * -> *) a. Alternative f => f a -> f a -> f a
<|>
(Text -> Parser Text
symbol Text
"Neural_Networks" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
NN) forall (f :: * -> *) a. Alternative f => f a -> f a -> f a
<|>
(Text -> Parser Text
symbol Text
"Probabilistic_Methods" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
PM) forall (f :: * -> *) a. Alternative f => f a -> f a -> f a
<|>
(Text -> Parser Text
symbol Text
"Reinforcement_Learning" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
RL) forall (f :: * -> *) a. Alternative f => f a -> f a -> f a
<|>
(Text -> Parser Text
symbol Text
"Rule_Learning" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
RuL) forall (f :: * -> *) a. Alternative f => f a -> f a -> f a
<|>
(Text -> Parser Text
symbol Text
"Theory" forall (f :: * -> *) a b. Functor f => f a -> b -> f b
$> CoraDoc
Th)
stash :: FilePath -> IO ()
stash :: String -> IO ()
stash String
fp = forall c. Binary c => String -> String -> Int -> Parser c -> IO ()
DL.stash String
fp String
"http://www.cs.umd.edu/~sen/lbc-proj/data/cora.tgz" Int
1433 Parser CoraDoc
docClassP
sourceCoraGraphEdges :: (MonadResource m, MonadThrow m) =>
FilePath
-> M.Map String (Int16, Seq Int16, CoraDoc)
-> ConduitT i (Maybe (G.Graph (DL.ContentRow Int16 CoraDoc))) m ()
sourceCoraGraphEdges :: forall (m :: * -> *) i.
(MonadResource m, MonadThrow m) =>
String
-> Map String (Int16, Seq Int16, CoraDoc)
-> ConduitT i (Maybe (Graph (ContentRow Int16 CoraDoc))) m ()
sourceCoraGraphEdges = forall (m :: * -> *) c i.
(MonadResource m, MonadThrow m) =>
String
-> Map String (Int16, Seq Int16, c)
-> ConduitT i (Maybe (Graph (ContentRow Int16 c))) m ()
DL.sourceGraphEdges
loadCoraGraph :: FilePath
-> IO (G.Graph (DL.ContentRow Int16 CoraDoc))
loadCoraGraph :: String -> IO (Graph (ContentRow Int16 CoraDoc))
loadCoraGraph = forall c. Binary c => String -> IO (Graph (ContentRow Int16 c))
DL.loadGraph