bbi-0.1.1: Tools for reading Big Binary Indexed files, e.g., bigBed, bigWig

Safe Haskell	None
Language	Haskell2010

Data.BBI.BigBed

Synopsis

data BBedFile
openBBedFile :: FilePath -> IO BBedFile
closeBBedFile :: BBedFile -> IO ()
query :: (ByteString, Int, Int) -> BBedFile -> ConduitT () (ByteString, Int, Int, ByteString) IO ()

Documentation

data BBedFile Source #

openBBedFile :: FilePath -> IO BBedFile Source #

closeBBedFile :: BBedFile -> IO () Source #

Arguments

:: (ByteString, Int, Int)	(Chr, start, end)
-> BBedFile
-> ConduitT () (ByteString, Int, Int, ByteString) IO ()

Find all regions that are overlapped with the query in the bigbed file.