bio-0.3.5: A bioinformatics library Source code Contents Index

Bio.Location.SeqLocation

Documentation

type SeqPos = OnSeq Pos Source

displaySeqPos :: SeqPos -> String Source

type ContigSeqLoc = OnSeq ContigLoc Source

withinContigSeqLoc :: SeqPos -> ContigSeqLoc -> Bool Source

displayContigSeqLoc :: ContigSeqLoc -> String Source

type SeqLoc = OnSeq Loc Source

isWithin :: SeqPos -> SeqLoc -> Bool Source

overlaps :: SeqLoc -> SeqLoc -> Bool Source

seqData :: (Error e, MonadError e m) => (SeqName -> m SeqData) -> SeqLoc -> m SeqData Source

display :: SeqLoc -> String Source

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