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Description |
Efficient lookup of query positions in a collection of target sequence
locations where positions and locations are associated with specific
sequence names. This is an extension of LocMap to use locations and
positions on named sequences as in SeqLocation.
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Synopsis |
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Location lookup maps for named sequences
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A data structure for efficiently finding target sequence
locations (SeqLoc.Loc) that overlap query positions or locations.
Each target location can be associated with an arbitrary additional
value in the lookup map.
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Empty lookup map.
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Creates a SeqLocMap from a list of target locations and their
associated objects
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Modifying location lookup maps
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Inserts a new target location and associated object into the
location lookup map.
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Searching for target locations
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Find the (possibly empty) list of target locations and associated
objects that contain a sequence position, in the sense of
Loc.isWithin.
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Find the (possibly empty) list of target locations and associated
objects that overlap a sequence location, in the sense of
Loc.overlaps.
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Produced by Haddock version 2.6.1 |