Bio.Location.Strand

Utilities for manipulating nucleotide sequences and locations on nucleotide sequences that occur on a forward or a reverse-complement strand.

Documentation

data Strand

Sequence strand

Constructors

Fwd

RevCompl

Instances

Bounded Strand

Enum Strand

Eq Strand

Ord Strand

Read Strand

Show Strand

Ix Strand

Stranded Strand

class Stranded s where

A nucleotide sequence or location on a nucleotide sequence that lies on a specific strand and has an orientation.

Methods

revCompl :: s -> s

Instances

Stranded Char

Stranded ByteString

Stranded Strand

Stranded Pos

Stranded ContigLoc

Stranded Loc

stranded :: Stranded s => Strand -> s -> s

Convert the orientation of a Stranded thing based on a specified Strand