bio-0.5.3: A bioinformatics library

Safe HaskellNone

Bio.GFF3.Feature

Documentation

data GFFAttr Source

Constructors

GFFAttr 

Fields

attrTag :: !ByteString
 
attrValues :: ![ByteString]
 

Instances

data Feature Source

Constructors

Feature 

Fields

seqid :: !ByteString
 
source :: !ByteString
 
ftype :: !ByteString
 
start :: !Offset
 
end :: !Offset
 
score :: !(Maybe Double)
 
strand :: !(Maybe Strand)
 
phase :: !(Maybe Offset)
 
attributes :: ![GFFAttr]
 

Instances

length :: Feature -> OffsetSource

parse :: (Error e, MonadError e m) => ByteString -> m FeatureSource

unparse :: Feature -> ByteStringSource

parseWithFasta :: (Error e, MonadError e m) => ByteString -> m ([Feature], [ByteString])Source

attrByTag :: ByteString -> Feature -> [ByteString]Source

ids :: Feature -> [ByteString]Source

parentIds :: Feature -> [ByteString]Source

contigLoc :: Feature -> ContigLocSource

loc :: Feature -> LocSource

seqLoc :: Feature -> SeqLocSource

name :: (Error e, MonadError e m) => Feature -> m SeqNameSource