bioinformatics-toolkit-0.3.1: A collection of bioinformatics tools

Safe Haskell	None
Language	Haskell2010

Bio.GO.GREAT

Synopsis

Documentation

data AssocRule Source #

how to associate genomic regions with genes

Constructors

BasalPlusExtension Int Int Int
TwoNearest
OneNearest

Instances

Default AssocRule Source #
Methods def :: AssocRule #

getRegulatoryDomains :: AssocRule -> [Gene a] -> [(BED3, a)] Source #

given a gene list and the rule, compute the rulatory domain for each gene

enrichedTerms :: (BEDLike b1, BEDLike b2, PrimMonad m) => Source m b1 -> Source m b2 -> BEDTree [GOId] -> m (Vector (GOId, (Double, Double))) Source #