Safe Haskell | None |
---|---|
Language | Haskell2010 |
Documentation
How to associate genomic regions with genes
BasalPlusExtension Int Int Int | Upstream, downstream and extension |
TwoNearest | Not implemented |
OneNearest | Not implemented |
defaultAssocRule :: AssocRule Source #
The default rule is defined as -5k ~ +1k around TSSs, plus up to 1000k extension.
getRegulatoryDomains :: AssocRule -> [Gene a] -> [(BED3, a)] Source #
Given a gene list and the rule, compute the rulatory domain for each gene