Bio.GO

Documentation

data GO

Constructors

GO

Fields

• _oboId :: !GOId
• _label :: !Text
• _subProcessOf :: !(Maybe GOId)
• _oboNS :: !Text

Instances

Read GO

Defined in Bio.GO

Methods

readsPrec :: Int -> ReadS GO

readList :: ReadS [GO]

readPrec :: ReadPrec GO

readListPrec :: ReadPrec [GO]

Show GO

Defined in Bio.GO

Methods

showsPrec :: Int -> GO -> ShowS

show :: GO -> String

showList :: [GO] -> ShowS

type GOId = Int

type GOMap = HashMap GOId GO

getParentById :: GOId -> GOMap -> Maybe GO

addTerm :: GO -> GOMap -> TermCount -> TermCount

Add a GO term to the count table. Term counts will propogate from child to its parents. This function works for cyclical graph as well.

enrichment

Arguments

:: (TermCount, Int)

Background frequency and the total number

-> (TermCount, Int)

Foreground

-> [(GOId, Double, Double)]