Safe Haskell | None |
---|---|
Language | Haskell2010 |
Synopsis
- data BAM
- getBamHeader :: FilePath -> IO BAMHeader
- streamBam :: MonadResource m => FilePath -> ConduitT i BAM m ()
- sinkBam :: MonadResource m => FilePath -> BAMHeader -> ConduitT BAM o m ()
- bamToBedC :: MonadIO m => BAMHeader -> ConduitT BAM BED m ()
- bamToBed :: BAMHeader -> BAM -> Maybe BED
- bamToFragmentC :: Monad m => BAMHeader -> ConduitT BAM BED m ()
- bamToFragment :: BAMHeader -> BAM -> Maybe BED
- bamToFastqC :: Monad m => ConduitT BAM Fastq m ()
- bamToFastq :: BAM -> Maybe Fastq
- sortedBamToBedPE :: Monad m => BAMHeader -> ConduitT BAM (BED, BED) m ()