Bio.Data.Fasta

Documentation

class FastaLike f where

Minimal complete definition

fromFastaRecord

Methods

fromFastaRecord :: (ByteString, [ByteString]) -> f

Convert a FASTA record, consisting of a record header and a record body, to a specific data type

readFasta :: FilePath -> ConduitT i f (ResourceT IO) ()

readFasta' :: FilePath -> IO [f]

non-stream version, read whole file in memory

Instances

FastaLike Motif

Defined in Bio.Data.Fasta

Methods

fromFastaRecord :: (ByteString, [ByteString]) -> Motif

readFasta :: FilePath -> ConduitT i Motif (ResourceT IO) ()

readFasta' :: FilePath -> IO [Motif]

BioSeq s a => FastaLike (s a)

Defined in Bio.Data.Fasta

Methods

fromFastaRecord :: (ByteString, [ByteString]) -> s a

readFasta :: FilePath -> ConduitT i (s a) (ResourceT IO) ()

readFasta' :: FilePath -> IO [s a]

fastaReader :: FilePath -> ConduitT i (ByteString, [ByteString]) (ResourceT IO) ()