biophd-0.0.2: Library for reading phd sequence files

Safe Haskell	Safe-Infered

Bio.Sequence.PhdData

Documentation

data PHD Source

Constructors

PHD Comment DNABlock (Maybe [PhdTag])

Instances

data Comment Source

Constructors

Comment
Fields chromatFile :: FilePath abiThumbprint :: String phredVersion :: String callMethod :: String qualityLevels :: Int time :: String traceArrayMinIndex :: Int traceArrayMaxIndex :: Int trim :: String chem :: String dye :: String

Instances

Eq Comment
Show Comment

data DNABlock Source

Constructors

DNABlock
Fields label :: String bases :: SeqData qualities :: QualData traceIndices :: [Int]

Instances

Show DNABlock
BioSeq DNABlock
BioSeqQual DNABlock

data PhdTag Source

Constructors

PhdTag
Fields tagType :: String source :: String unpaddedReadPosition :: [Offset] date :: String comment :: String

Instances

Eq PhdTag
Show PhdTag

defaultComment :: Comment Source

defaultDNABlock :: DNABlock Source

defaultPhdTag :: PhdTag Source