Bio.Sequence.PhdData

Documentation

data Phd

Constructors

Phd Comment DNABlock (Maybe [PhdTag])

Instances

Show Phd

data Comment

Constructors

Comment

Fields

chromatFile :: FilePath

abiThumbprint :: String

phredVersion :: String

callMethod :: String

qualityLevels :: Int

time :: String

traceArrayMinIndex :: Int

traceArrayMaxIndex :: Int

trim :: String

chem :: String

dye :: String

Instances

Eq Comment

Show Comment

data DNABlock

Constructors

DNABlock

Fields

label :: String

bases :: SeqData

qualities :: QualData

traceIndices :: [Int]

Instances

Show DNABlock

BioSeq DNABlock

BioSeqQual DNABlock

data PhdTag

Constructors

PhdTag

Fields

tagType :: String

source :: String

unpaddedReadPosition :: [Offset]

date :: String

comment :: String

Instances

Eq PhdTag

Show PhdTag

defaultComment :: Comment

defaultDNABlock :: DNABlock

defaultPhdTag :: PhdTag