biophd-0.0.4: Library for reading phd sequence files

Safe HaskellSafe-Infered

Bio.Sequence.PhdData

Documentation

data Phd Source

Constructors

Phd 

Fields

comment :: Comment
 
dnaBlock :: DNABlock
 
phdTags :: Maybe [PhdTag]
 

Instances

data Comment Source

Constructors

Comment 

Fields

chromatFile :: FilePath
 
abiThumbprint :: String
 
phredVersion :: String
 
callMethod :: String
 
qualityLevels :: Int
 
time :: String
 
traceArrayMinIndex :: Int
 
traceArrayMaxIndex :: Int
 
trim :: String
 
chem :: String
 
dye :: String
 

Instances

data DNABlock Source

Constructors

DNABlock 

Fields

label :: String
 
bases :: SeqData
 
qualities :: QualData
 
traceIndices :: [Int]
 

Instances

defaultComment :: CommentSource

defaultDNABlock :: DNABlockSource

defaultPhdTag :: PhdTagSource