cobot-0.1.1.4: Computational biology toolkit to collaborate with researchers in constructive protein engineering

Safe Haskell	None
Language	Haskell2010

Bio.Chain.Alignment.Scoring

Documentation

module Bio.Chain.Alignment.Scoring.Loader

matrix :: QuasiQuoter Source #

data BLOSUM62 Source #

Constructors

Instances

Eq BLOSUM62 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods (==) :: BLOSUM62 -> BLOSUM62 -> Bool # (/=) :: BLOSUM62 -> BLOSUM62 -> Bool #
Show BLOSUM62 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods showsPrec :: Int -> BLOSUM62 -> ShowS # show :: BLOSUM62 -> String # showList :: [BLOSUM62] -> ShowS #
ScoringMatrix BLOSUM62 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods scoring :: BLOSUM62 -> Char -> Char -> Int Source #

data PAM250 Source #

Constructors

Instances

Eq PAM250 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods (==) :: PAM250 -> PAM250 -> Bool # (/=) :: PAM250 -> PAM250 -> Bool #
Show PAM250 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods showsPrec :: Int -> PAM250 -> ShowS # show :: PAM250 -> String # showList :: [PAM250] -> ShowS #
ScoringMatrix PAM250 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods scoring :: PAM250 -> Char -> Char -> Int Source #

data NUC44 Source #

Constructors

Instances

Eq NUC44 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods (==) :: NUC44 -> NUC44 -> Bool # (/=) :: NUC44 -> NUC44 -> Bool #
Show NUC44 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods showsPrec :: Int -> NUC44 -> ShowS # show :: NUC44 -> String # showList :: [NUC44] -> ShowS #
ScoringMatrix NUC44 Source #
Instance details Defined in Bio.Chain.Alignment.Scoring Methods scoring :: NUC44 -> Char -> Char -> Int Source #

blosum62 :: Substitution Char Source #

pam250 :: Substitution Char Source #

nuc44 :: Substitution Char Source #