Safe Haskell	None
Language	Haskell2010

Bio.Protein.AminoAcid.Instances

Contents

Orphan instances

Synopsis

class Createable a where
- type Create a :: *
- create :: Create a
class Functor r => HasRadical r where
- type RadicalType r a :: *
- radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env r) g a) (RadicalType r a)
class Functor r => HasRadicalType r where
- radicalType :: (Functor f, Functor g) => Getting AA (AminoAcid f (Env r) g a) AA
class Functor r => HasCA r where
- ca :: (Functor f, Functor g) => Lens' (AminoAcid f r g a) a
class Functor r => HasC r where
- c :: (Functor f, Functor g) => Lens' (AminoAcid f g r a) a
class Functor r => HasO r where
- o :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env r) a) a
class Functor r => HasOXT r where
- oxt :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env r) a) a
class Functor r => HasN r where
- n :: (Functor f, Functor g) => Lens' (AminoAcid r f g a) a
class Functor f => HasAtom f where
- atom :: Lens' (f a) a
hydrogens :: Lens' (Env [] a) [a]

Documentation

class Createable a where Source #

Single object can be created

Associated Types

type Create a :: * Source #

Methods

create :: Create a Source #

Function to create single object

Instances

Createable (BBOXTRH a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBOXTRH a) :: Type Source # Methods create :: Create (BBOXTRH a) Source #
Createable (BBORH a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBORH a) :: Type Source # Methods create :: Create (BBORH a) Source #
Createable (BBOXTR a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBOXTR a) :: Type Source # Methods create :: Create (BBOXTR a) Source #
Createable (BBOR a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBOR a) :: Type Source # Methods create :: Create (BBOR a) Source #
Createable (BBOCG a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBOCG a) :: Type Source # Methods create :: Create (BBOCG a) Source #
Createable (BBOT a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBOT a) :: Type Source # Methods create :: Create (BBOT a) Source #
Createable (BBO a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBO a) :: Type Source # Methods create :: Create (BBO a) Source #
Createable (BBCG a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBCG a) :: Type Source # Methods create :: Create (BBCG a) Source #
Createable (BBCAT a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBCAT a) :: Type Source # Methods create :: Create (BBCAT a) Source #
Createable (BBT a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBT a) :: Type Source # Methods create :: Create (BBT a) Source #
Createable (BBCA a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BBCA a) :: Type Source # Methods create :: Create (BBCA a) Source #
Createable (BB a) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type Create (BB a) :: Type Source # Methods create :: Create (BB a) Source #

class Functor r => HasRadical r where Source #

Has lens to observe, set and modify radicals

Associated Types

type RadicalType r a :: * Source #

Methods

radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env r) g a) (RadicalType r a) Source #

Lens for radical atom or group

Instances

HasRadical Identity Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type RadicalType Identity a :: Type Source # Methods radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env Identity) g a) (RadicalType Identity a) Source #
HasRadical CG Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type RadicalType CG a :: Type Source # Methods radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env CG) g a) (RadicalType CG a) Source #
HasRadical Radical Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type RadicalType Radical a :: Type Source # Methods radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env Radical) g a) (RadicalType Radical a) Source #
HasRadical (Const x :: Type -> Type) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Associated Types type RadicalType (Const x) a :: Type Source # Methods radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env (Const x)) g a) (RadicalType (Const x) a) Source #

class Functor r => HasRadicalType r where Source #

Has lens to observe radical types

Methods

radicalType :: (Functor f, Functor g) => Getting AA (AminoAcid f (Env r) g a) AA Source #

Getter for radical type

Instances

HasRadicalType CG Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods radicalType :: (Functor f, Functor g) => Getting AA (AminoAcid f (Env CG) g a) AA Source #
HasRadicalType Radical Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods radicalType :: (Functor f, Functor g) => Getting AA (AminoAcid f (Env Radical) g a) AA Source #
HasRadicalType (Const AA :: Type -> Type) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods radicalType :: (Functor f, Functor g) => Getting AA (AminoAcid f (Env (Const AA)) g a) AA Source #

class Functor r => HasCA r where Source #

Has lens to observe, set and modify ca_ atom

Methods

ca :: (Functor f, Functor g) => Lens' (AminoAcid f r g a) a Source #

Lens for ca_ atom

Instances

HasCA Identity Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods ca :: (Functor f, Functor g) => Lens' (AminoAcid f Identity g a) a Source #
Functor f => HasCA (Env f) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods ca :: (Functor f0, Functor g) => Lens' (AminoAcid f0 (Env f) g a) a Source #

class Functor r => HasC r where Source #

Has lens to observe, set and modify c_ atom

Methods

c :: (Functor f, Functor g) => Lens' (AminoAcid f g r a) a Source #

Lens for c_ atom

Instances

HasC Identity Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods c :: (Functor f, Functor g) => Lens' (AminoAcid f g Identity a) a Source #
Functor f => HasC (Env f) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods c :: (Functor f0, Functor g) => Lens' (AminoAcid f0 g (Env f) a) a Source #

class Functor r => HasO r where Source #

Has lens to observe, set and modify o_ atom

Methods

o :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env r) a) a Source #

Lens for o_ atom

Instances

HasO Identity Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods o :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env Identity) a) a Source #
HasO OXT Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods o :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env OXT) a) a Source #

class Functor r => HasOXT r where Source #

Has lens to observe, set and modify OXT atom

Methods

oxt :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env r) a) a Source #

Lens for OXT atom

Instances

HasOXT OXT Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods oxt :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env OXT) a) a Source #

class Functor r => HasN r where Source #

Has lens to observe, set and modify n_ atom

Methods

n :: (Functor f, Functor g) => Lens' (AminoAcid r f g a) a Source #

Lens for n_ atom

Instances

HasN Identity Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods n :: (Functor f, Functor g) => Lens' (AminoAcid Identity f g a) a Source #
Functor f => HasN (Env f) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods n :: (Functor f0, Functor g) => Lens' (AminoAcid (Env f) f0 g a) a Source #

class Functor f => HasAtom f where Source #

Lens to get atom from some enviroment

Methods

atom :: Lens' (f a) a Source #

Lens for exact atom get

Instances

HasAtom Identity Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods atom :: Lens' (Identity a) a Source #
Functor r => HasAtom (Env r) Source #
Instance details Defined in Bio.Protein.AminoAcid.Instances Methods atom :: Lens' (Env r a) a Source #

hydrogens :: Lens' (Env [] a) [a] Source #

Lens to get hydrogens from hydrated atom

Orphan instances

FromThreeSymbols AA Source #	Parse three symbols encoding
Instance details Methods fromThreeSymbols :: Text -> Maybe AA Source #
ThreeSymbols AA Source #	Three symbols encoding
Instance details Methods threeSymbols :: AA -> Text Source #
FromSymbol AA Source #	Parse symbol encoding
Instance details Methods fromSymbol :: Char -> Maybe AA Source # fromSymbolE :: Char -> Either Char AA Source #
Symbol AA Source #	Symbol encoding
Instance details Methods symbol :: AA -> Char Source #
IsString [AA] Source #
Instance details Methods fromString :: String -> [AA] #
IsString (Array Int AA) Source #
Instance details Methods fromString :: String -> Array Int AA #
(Functor nr, HasRadicalType car, Functor cr) => Symbol (AminoAcid nr (Env car) cr a) Source #	Lens to get Symbol from every suitable amino acid
Instance details Methods symbol :: AminoAcid nr (Env car) cr a -> Char Source #