Bio.Protein.AminoAcid.Instances

Documentation

class Createable a where

Single object can be created

Associated Types

type Create a :: Type

Methods

create :: Create a

Function to create single object

Instances

Createable (BBOXTRH a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBOXTRH a)

Methods

create :: Create (BBOXTRH a)

Createable (BBORH a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBORH a)

Methods

create :: Create (BBORH a)

Createable (BBOXTR a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBOXTR a)

Methods

create :: Create (BBOXTR a)

Createable (BBOR a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBOR a)

Methods

create :: Create (BBOR a)

Createable (BBOCG a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBOCG a)

Methods

create :: Create (BBOCG a)

Createable (BBOT a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBOT a)

Methods

create :: Create (BBOT a)

Createable (BBO a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBO a)

Methods

create :: Create (BBO a)

Createable (BBCG a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBCG a)

Methods

create :: Create (BBCG a)

Createable (BBCAT a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBCAT a)

Methods

create :: Create (BBCAT a)

Createable (BBT a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBT a)

Methods

create :: Create (BBT a)

Createable (BBCA a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BBCA a)

Methods

create :: Create (BBCA a)

Createable (BB a)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type Create (BB a)

Methods

create :: Create (BB a)

class Functor r => HasRadical r where

Has lens to observe, set and modify radicals

Associated Types

type RadicalType r a :: Type

Methods

radical :: (Functor f, Functor g) => Lens' (AminoAcid f (Env r) g a) (RadicalType r a)

Lens for radical atom or group

Instances

HasRadical Identity

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type RadicalType Identity a

Methods

radical :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f (Env Identity) g a) (RadicalType Identity a)

HasRadical CG

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type RadicalType CG a

Methods

radical :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f (Env CG) g a) (RadicalType CG a)

HasRadical Radical

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type RadicalType Radical a

Methods

radical :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f (Env Radical) g a) (RadicalType Radical a)

HasRadical (Const x :: Type -> Type)

Defined in Bio.Protein.AminoAcid.Instances

Associated Types

type RadicalType (Const x) a

Methods

radical :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f (Env (Const x)) g a) (RadicalType (Const x) a)

class Functor r => HasRadicalType r where

Has lens to observe radical types

Methods

radicalType :: (Functor f, Functor g) => Getting AA (AminoAcid f (Env r) g a) AA

Getter for radical type

Instances

HasRadicalType CG

Defined in Bio.Protein.AminoAcid.Instances

Methods

radicalType :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Getting AA (AminoAcid f (Env CG) g a) AA

HasRadicalType Radical

Defined in Bio.Protein.AminoAcid.Instances

Methods

radicalType :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Getting AA (AminoAcid f (Env Radical) g a) AA

HasRadicalType (Const AA :: Type -> Type)

Defined in Bio.Protein.AminoAcid.Instances

Methods

radicalType :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Getting AA (AminoAcid f (Env (Const AA)) g a) AA

class Functor r => HasCA r where

Has lens to observe, set and modify ca_ atom

Methods

ca :: (Functor f, Functor g) => Lens' (AminoAcid f r g a) a

Lens for ca_ atom

Instances

HasCA Identity

Defined in Bio.Protein.AminoAcid.Instances

Methods

ca :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f Identity g a) a

Functor f => HasCA (Env f)

Defined in Bio.Protein.AminoAcid.Instances

Methods

ca :: forall (f0 :: Type -> Type) (g :: Type -> Type) a. (Functor f0, Functor g) => Lens' (AminoAcid f0 (Env f) g a) a

class Functor r => HasC r where

Has lens to observe, set and modify c_ atom

Methods

c :: (Functor f, Functor g) => Lens' (AminoAcid f g r a) a

Lens for c_ atom

Instances

HasC Identity

Defined in Bio.Protein.AminoAcid.Instances

Methods

c :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f g Identity a) a

Functor f => HasC (Env f)

Defined in Bio.Protein.AminoAcid.Instances

Methods

c :: forall (f0 :: Type -> Type) (g :: Type -> Type) a. (Functor f0, Functor g) => Lens' (AminoAcid f0 g (Env f) a) a

class Functor r => HasO r where

Has lens to observe, set and modify o_ atom

Methods

o :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env r) a) a

Lens for o_ atom

Instances

HasO Identity

Defined in Bio.Protein.AminoAcid.Instances

Methods

o :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f g (Env Identity) a) a

HasO OXT

Defined in Bio.Protein.AminoAcid.Instances

Methods

o :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f g (Env OXT) a) a

class Functor r => HasOXT r where

Has lens to observe, set and modify OXT atom

Methods

oxt :: (Functor f, Functor g) => Lens' (AminoAcid f g (Env r) a) a

Lens for OXT atom

Instances

HasOXT OXT

Defined in Bio.Protein.AminoAcid.Instances

Methods

oxt :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid f g (Env OXT) a) a

class Functor r => HasN r where

Has lens to observe, set and modify n_ atom

Methods

n :: (Functor f, Functor g) => Lens' (AminoAcid r f g a) a

Lens for n_ atom

Instances

HasN Identity

Defined in Bio.Protein.AminoAcid.Instances

Methods

n :: forall (f :: Type -> Type) (g :: Type -> Type) a. (Functor f, Functor g) => Lens' (AminoAcid Identity f g a) a

Functor f => HasN (Env f)

Defined in Bio.Protein.AminoAcid.Instances

Methods

n :: forall (f0 :: Type -> Type) (g :: Type -> Type) a. (Functor f0, Functor g) => Lens' (AminoAcid (Env f) f0 g a) a

class Functor f => HasAtom f where

Lens to get atom from some enviroment

Methods

atom :: Lens' (f a) a

Lens for exact atom get

Instances

HasAtom Identity

Defined in Bio.Protein.AminoAcid.Instances

Methods

atom :: Lens' (Identity a) a

Functor r => HasAtom (Env r)

Defined in Bio.Protein.AminoAcid.Instances

Methods

atom :: Lens' (Env r a) a

hydrogens :: Lens' (Env [] a) [a]

Lens to get hydrogens from hydrated atom

Orphan instances

FromThreeSymbols AA

Parse three symbols encoding

Methods

fromThreeSymbols :: Text -> Maybe AA

ThreeSymbols AA

Three symbols encoding

Methods

threeSymbols :: AA -> Text

FromSymbol AA

Parse symbol encoding

Methods

fromSymbol :: Char -> Maybe AA

fromSymbolE :: Char -> Either Char AA

Symbol AA

Symbol encoding

Methods

symbol :: AA -> Char

IsString [AA]

Methods

fromString :: String -> [AA]

IsString (Array Int AA)

Methods

fromString :: String -> Array Int AA

(Functor nr, HasRadicalType car, Functor cr) => Symbol (AminoAcid nr (Env car) cr a)

Lens to get Symbol from every suitable amino acid

Methods

symbol :: AminoAcid nr (Env car) cr a -> Char