Bio.Sequence.Basecalled.Type

Documentation

newtype BasecalledSequence

Constructors

BasecalledSequence (WeightedSequence Double Char)

Instances

Eq BasecalledSequence

Defined in Bio.Sequence.Basecalled.Type

Methods

(==) :: BasecalledSequence -> BasecalledSequence -> Bool

(/=) :: BasecalledSequence -> BasecalledSequence -> Bool

Show BasecalledSequence

Defined in Bio.Sequence.Basecalled.Type

Methods

showsPrec :: Int -> BasecalledSequence -> ShowS

show :: BasecalledSequence -> String

showList :: [BasecalledSequence] -> ShowS

IsSequence BasecalledSequence

Defined in Bio.Sequence.Basecalled.Type

Associated Types

type Element BasecalledSequence :: Type

type Marking BasecalledSequence :: Type

type Weight BasecalledSequence :: Type

Methods

toSequence :: BasecalledSequence -> Sequence (Marking BasecalledSequence) (Weight BasecalledSequence) (Element BasecalledSequence)

fromSequence :: Sequence (Marking BasecalledSequence) (Weight BasecalledSequence) (Element BasecalledSequence) -> BasecalledSequence

Cleanable BasecalledSequence

Defined in Bio.ABI.Clean

Methods

clean :: BasecalledSequence -> Maybe BasecalledSequence

cleanWith :: Thresholds -> BasecalledSequence -> Maybe BasecalledSequence

SequenceDecodable ByteString BasecalledSequence

Converts ByteString (that should be content of ABI file) into BasecalledSequence.

Defined in Bio.ABI.Decode

Methods

sequenceDecode :: ByteString -> Either Text BasecalledSequence

SequenceDecodable ByteString BasecalledSequence

Converts ByteString (that should be content of ABI file) into BasecalledSequence.

Defined in Bio.ABI.Decode

Methods

sequenceDecode :: ByteString -> Either Text BasecalledSequence

type Element BasecalledSequence

Defined in Bio.Sequence.Basecalled.Type

type Element BasecalledSequence = Char

type Marking BasecalledSequence

Defined in Bio.Sequence.Basecalled.Type

type Marking BasecalledSequence = ()

type Weight BasecalledSequence

Defined in Bio.Sequence.Basecalled.Type

type Weight BasecalledSequence = Double