| Absent | Bio.MAE.Type, Bio.MAE |
| AC | |
| 1 (Type/Class) | Bio.Uniprot.Type, Bio.Uniprot |
| 2 (Data Constructor) | Bio.Uniprot.Type, Bio.Uniprot |
| ac | Bio.Uniprot.Type, Bio.Uniprot |
| accession | Bio.GB.Type, Bio.GB |
| accessionNumbers | Bio.Uniprot.Type, Bio.Uniprot |
| addMarkings | Bio.Sequence.Functions.Marking, Bio.Sequence |
| AGRICOLA | Bio.Uniprot.Type, Bio.Uniprot |
| Allergen | Bio.Uniprot.Type, Bio.Uniprot |
| AlphaHelix | Bio.Structure |
| altLocList | Bio.MMTF.Type, Bio.MMTF |
| AltName | |
| 1 (Type/Class) | Bio.Uniprot.Type, Bio.Uniprot |
| 2 (Data Constructor) | Bio.Uniprot.Parser |
| altNames | Bio.Uniprot.Type, Bio.Uniprot |
| Archea | Bio.Uniprot.Type, Bio.Uniprot |
| asBinary | Bio.MMTF.Decode.MessagePack |
| asChar | Bio.MMTF.Decode.MessagePack |
| asFloat | Bio.MMTF.Decode.MessagePack |
| asFloatList | Bio.MMTF.Decode.MessagePack |
| asInt | Bio.MMTF.Decode.MessagePack |
| asIntList | Bio.MMTF.Decode.MessagePack |
| asObjectList | Bio.MMTF.Decode.MessagePack |
| Assembly | |
| 1 (Type/Class) | Bio.MMTF.Type, Bio.MMTF |
| 2 (Data Constructor) | Bio.MMTF.Type, Bio.MMTF |
| assemblyName | Bio.MMTF.Type, Bio.MMTF |
| asStr | Bio.MMTF.Decode.MessagePack |
| asStrList | Bio.MMTF.Decode.MessagePack |
| Atom | |
| 1 (Type/Class) | Bio.PDB.Type |
| 2 (Data Constructor) | Bio.PDB.Type |
| 3 (Type/Class) | Bio.Structure |
| 4 (Data Constructor) | Bio.Structure |
| atom | |
| 1 (Function) | Bio.MMTF.Type, Bio.MMTF |
| 2 (Function) | Bio.Structure.Functions |
| atomAltLoc | Bio.PDB.Type |
| atomChainID | Bio.PDB.Type |
| atomCharge | Bio.PDB.Type |
| atomCoords | Bio.Structure |
| AtomData | |
| 1 (Type/Class) | Bio.MMTF.Type, Bio.MMTF |
| 2 (Data Constructor) | Bio.MMTF.Type, Bio.MMTF |
| atomData | Bio.MMTF.Decode |
| atomElement | |
| 1 (Function) | Bio.PDB.Type |
| 2 (Function) | Bio.Structure |
| atomICode | Bio.PDB.Type |
| atomId | Bio.Structure |
| atomIdList | Bio.MMTF.Type, Bio.MMTF |
| atomInputIndex | Bio.Structure |
| atomName | |
| 1 (Function) | Bio.PDB.Type |
| 2 (Function) | Bio.Structure |
| atomOccupancy | Bio.PDB.Type |
| atomResName | Bio.PDB.Type |
| atomResSeq | Bio.PDB.Type |
| atoms | Bio.Structure |
| atomSerial | Bio.PDB.Type |
| atomTempFactor | Bio.PDB.Type |
| atomX | Bio.PDB.Type |
| atomY | Bio.PDB.Type |
| atomZ | Bio.PDB.Type |
| atP | Bio.MMTF.Decode.MessagePack |
| atPM | Bio.MMTF.Decode.MessagePack |
| atPMD | Bio.MMTF.Decode.MessagePack |
| AUTHOR | Bio.PDB.Type |
| authors | Bio.GB.Type, Bio.GB |