Bio.FASTA

Documentation

module Bio.FASTA.Type

class WritableFastaToken a where

Methods

tokenToString :: a -> String

Instances

WritableFastaToken Char

Defined in Bio.FASTA.Writer

Methods

tokenToString :: Char -> String

WritableFastaToken ModItem

Defined in Bio.FASTA.Writer

Methods

tokenToString :: ModItem -> String

fromFile :: (MonadFail m, MonadIO m) => FilePath -> m (Fasta Char)

Reads FastaSequence from given file.

toFile :: MonadIO m => Fasta Char -> FilePath -> m ()

Writes FastaSequence to file.

fastaP :: ParsableFastaToken a => Parser (Fasta a)

Parser of .fasta file.

fastaPGeneric :: ParsableFastaToken a => (Char -> Bool) -> Parser (Fasta a)

fastaLine :: ParsableFastaToken a => (Char -> Bool) -> Parser [a]

modificationP :: Parser Modification