Bio.MMTF.Decode.Codec

Documentation

codecCommon :: Binary a => (ByteString -> a) -> Int -> ByteString -> [a]

data BinaryData

Constructors

BD

Fields

• binaryCodec :: !Int32
• binaryLength :: !Int32
• binaryParam :: !Int32
• binaryData :: !ByteString

Instances

Show BinaryData

Defined in Bio.MMTF.Decode.Codec

Methods

showsPrec :: Int -> BinaryData -> ShowS

show :: BinaryData -> String

showList :: [BinaryData] -> ShowS

parseBinary :: ByteString -> BinaryData

Parse useless header for binary data

codec1 :: BinaryData -> [Float]

Interpret bytes as array of 32-bit floating-point numbers.

codec2 :: BinaryData -> [Int8]

Interpret bytes as array of 8-bit signed integers.

codec3 :: BinaryData -> [Int16]

Interpret bytes as array of 16-bit signed integers.

codec4 :: BinaryData -> [Int32]

Interpret bytes as array of 32-bit signed integers.

codec5 :: BinaryData -> [Text]

Interpret bytes as array of 8-bit unsigned integers, then iteratively consume length many bytes to form a string array.

codec6 :: BinaryData -> [Char]

Interpret bytes as array of 32-bit signed integers, then run-length decode into array of characters.

codec7 :: BinaryData -> [Int32]

Interpret bytes as array of 32-bit signed integers, then run-length decode into array of 32-bit signed integers.

codec8 :: BinaryData -> [Int32]

Interpret bytes as array of 32-bit signed integers, then run-length decode into array of 32-bit signed integers, then delta decode into array of 32-bit signed integers.

codec9 :: BinaryData -> [Float]

Interpret bytes as array of 32-bit signed integers, then run-length decode into array of 32-bit signed integers, then integer decode into array of 32-bit floating-point numbers using the divisor parameter.

codec10 :: BinaryData -> [Float]

Interpret bytes as array of 16-bit signed integers, then unpack into array of 32-bit integers, then delta decode into array of 32-bit integers, then integer decode into array of 32-bit floating-point numbers using the divisor parameter.

codec11 :: BinaryData -> [Float]

Interpret bytes as array of 16-bit signed integers, then integer decode into array of 32-bit floating-point numbers using the divisor parameter.

codec12 :: BinaryData -> [Float]

Interpret bytes as array of 16-bit signed integers, then unpack into array of 32-bit signed integers, then integer decode into array of 32-bit floating-point numbers using the divisor parameter.

codec13 :: BinaryData -> [Float]

Interpret array of bytes as array of 8-bit signed integers, then unpack into array of 32-bit signed integers, then integer decode into array of 32-bit floating-point numbers using the divisor parameter.

codec14 :: BinaryData -> [Int32]

Interpret bytes as array of 16-bit signed integers, then unpack into array of 32-bit signed integers.

codec15 :: BinaryData -> [Int32]

Interpret bytes as array of 8-bit signed integers, then unpack into array of 32-bit signed integers.

runLengthDec :: Integral a => [a] -> [a]

deltaDec :: Num a => [a] -> [a]

recIndexDec :: (Integral a, Bounded a, Eq a) => [a] -> [Int32]

integerDec :: Integral a => a -> [a] -> [Float]

ssDec :: Int8 -> SecondaryStructure

ucDec :: MonadFail m => [Float] -> m UnitCell

m44Dec :: MonadFail m => [Float] -> m M44