Safe Haskell | Safe-Inferred |
---|---|
Language | Haskell2010 |
Synopsis
- type Fasta a = [FastaItem a]
- data FastaItem a = FastaItem {
- name :: Text
- sequ :: BareSequence a
- class ParsableFastaToken a where
- data Modification
- = Mod_A_Star
- | Mod_C_Star
- | Mod_G_Star
- | Mod_T_Star
- | Mod_rA
- | Mod_rC
- | Mod_rG
- | Mod_rU
- | Mod_Plus_A
- | Mod_Plus_C
- | Mod_Plus_G
- | Mod_Plus_T
- | Mod_rAf
- | Mod_rCf
- | Mod_rGf
- | Mod_rUf
- | Mod_mA
- | Mod_mC
- | Mod_mG
- | Mod_mU
- | Mod_mA_Star
- | Mod_mC_Star
- | Mod_mG_Star
- | Mod_mU_Star
- | Mod_dU
- | Mod_5Bio
- | Mod_iBio
- | Mod_56FAM
- | Mod_36FAM
- | Mod_5HEX
- | Mod_5TMR
- | Mod_3BHQ1
- | Mod_3BHQ2
- | Mod_5NH2
- | Mod_3NH2
- | Mod_5PO4
- | Mod_3PO4
- | Mod_3BioTEG
- | Mod_C12
- | Mod_NHSdT
- | Mod_5Mal
- | Mod_5thio
- | Mod_3thio
- | Mod_3azide
- | Mod_3alkine
- | Mod_5CholTEG
- | Mod_3CholTEG
- | Mod_5C10
- | Mod_5Alk
- | Mod_GC
- | Mod_GT
- | Mod_AT
- | Mod_TG
- | Mod_AC
- | Mod_CC
- | Mod_AA
- | Mod_TC
- | Mod_TT
- | Mod_CG
- | Mod_GG
- | Mod_AG
- | Mod_GA
- | Mod_CA
- | Mod_CT
- | Mod_TA
- | Mod_AAA
- | Mod_AAC
- | Mod_ACT
- | Mod_ATC
- | Mod_ATG
- | Mod_CAG
- | Mod_AGA
- | Mod_CAT
- | Mod_CCG
- | Mod_CGT
- | Mod_CTG
- | Mod_GAA
- | Mod_GAC
- | Mod_GCT
- | Mod_GGT
- | Mod_GTT
- | Mod_TAC
- | Mod_TCT
- | Mod_TGC
- | Mod_TGG
- | Mod_TTC
- | Mod_TTT
- | Unknown String
- data ModItem
- modificationToString :: Modification -> String
Documentation
type Fasta a = [FastaItem a] Source #
Type alias for FASTA file. satisfies the following format : >(s|t)*[^nr]+(s|t)*(n|r)*((w|s)(n|r)*)*
One record in FASTA file.
FastaItem | |
|
Instances
Functor FastaItem Source # | |
Show a => Show (FastaItem a) Source # | |
Eq a => Eq (FastaItem a) Source # | |
Ord a => Ord (FastaItem a) Source # | |
Defined in Bio.FASTA.Type |
class ParsableFastaToken a where Source #
Instances
ParsableFastaToken ModItem Source # | |
Defined in Bio.FASTA.Parser | |
ParsableFastaToken Char Source # | |
Defined in Bio.FASTA.Parser |
data Modification Source #
Instances
Instances
Generic ModItem Source # | |
Show ModItem Source # | |
ParsableFastaToken ModItem Source # | |
Defined in Bio.FASTA.Parser | |
WritableFastaToken ModItem Source # | |
Defined in Bio.FASTA.Writer tokenToString :: ModItem -> String Source # | |
Eq ModItem Source # | |
type Rep ModItem Source # | |
Defined in Bio.FASTA.Type type Rep ModItem = D1 ('MetaData "ModItem" "Bio.FASTA.Type" "cobot-io-0.1.5.3-8IvejFoA0taHHrXPWlLhk" 'False) (C1 ('MetaCons "Mod" 'PrefixI 'False) (S1 ('MetaSel ('Nothing :: Maybe Symbol) 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Modification)) :+: C1 ('MetaCons "Letter" 'PrefixI 'False) (S1 ('MetaSel ('Nothing :: Maybe Symbol) 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Char))) |