Safe Haskell | Safe-Inferred |
---|---|
Language | Haskell2010 |
Bio.GB.Type
Documentation
data GenBankSequence Source #
Type that represents contents of .gb file that is used to store information about genetic constructions.
Constructors
GenBankSequence | |
Instances
Meta-information about sequence.
Constructors
Meta | |
Fields
|
Instances
At this moment there are two known (to me) forms of seuqences that can be present in .gb file.
First line that should be present in every .gb file. Contains general info about sequence.
Constructors
Locus | |
Instances
Generic Locus Source # | |
Show Locus Source # | |
NFData Locus Source # | |
Defined in Bio.GB.Type | |
Eq Locus Source # | |
type Rep Locus Source # | |
Defined in Bio.GB.Type type Rep Locus = D1 ('MetaData "Locus" "Bio.GB.Type" "cobot-io-0.1.5.5-2fgiMxNKBm19YNVvDwIPRV" 'False) (C1 ('MetaCons "Locus" 'PrefixI 'True) ((S1 ('MetaSel ('Just "name") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text) :*: (S1 ('MetaSel ('Just "len") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Int) :*: S1 ('MetaSel ('Just "molType") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text))) :*: (S1 ('MetaSel ('Just "form") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Form)) :*: (S1 ('MetaSel ('Just "gbDivision") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text)) :*: S1 ('MetaSel ('Just "modificationDate") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text))))) |
Id of sequence in GenBank database.
Constructors
Version | |
Instances
Generic Version Source # | |
Show Version Source # | |
NFData Version Source # | |
Defined in Bio.GB.Type | |
Eq Version Source # | |
type Rep Version Source # | |
Defined in Bio.GB.Type type Rep Version = D1 ('MetaData "Version" "Bio.GB.Type" "cobot-io-0.1.5.5-2fgiMxNKBm19YNVvDwIPRV" 'False) (C1 ('MetaCons "Version" 'PrefixI 'True) (S1 ('MetaSel ('Just "versionT") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text) :*: S1 ('MetaSel ('Just "gbId") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text)))) |
Information about source of this sequence.
Constructors
Source | |
Instances
Generic Source Source # | |
Show Source Source # | |
NFData Source Source # | |
Defined in Bio.GB.Type | |
Eq Source Source # | |
type Rep Source Source # | |
Defined in Bio.GB.Type type Rep Source = D1 ('MetaData "Source" "Bio.GB.Type" "cobot-io-0.1.5.5-2fgiMxNKBm19YNVvDwIPRV" 'False) (C1 ('MetaCons "Source" 'PrefixI 'True) (S1 ('MetaSel ('Just "sourceT") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text) :*: S1 ('MetaSel ('Just "organism") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text)))) |
Publications by the authors of the sequence that discuss the data reported in the record.
Constructors
Reference | |
Instances
Generic Reference Source # | |
Show Reference Source # | |
NFData Reference Source # | |
Defined in Bio.GB.Type | |
Eq Reference Source # | |
type Rep Reference Source # | |
Defined in Bio.GB.Type type Rep Reference = D1 ('MetaData "Reference" "Bio.GB.Type" "cobot-io-0.1.5.5-2fgiMxNKBm19YNVvDwIPRV" 'False) (C1 ('MetaCons "Reference" 'PrefixI 'True) ((S1 ('MetaSel ('Just "referenceT") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text) :*: S1 ('MetaSel ('Just "authors") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text))) :*: (S1 ('MetaSel ('Just "title") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text)) :*: (S1 ('MetaSel ('Just "journal") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text)) :*: S1 ('MetaSel ('Just "pubmed") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe Text)))))) |
One single feature.
Constructors
Feature | |
Instances
Generic Feature Source # | |
Show Feature Source # | |
IsMarking Feature Source # | |
Defined in Bio.GB.Type | |
NFData Feature Source # | |
Defined in Bio.GB.Type | |
Eq Feature Source # | |
Ord Feature Source # | |
type Rep Feature Source # | |
Defined in Bio.GB.Type type Rep Feature = D1 ('MetaData "Feature" "Bio.GB.Type" "cobot-io-0.1.5.5-2fgiMxNKBm19YNVvDwIPRV" 'False) (C1 ('MetaCons "Feature" 'PrefixI 'True) (S1 ('MetaSel ('Just "fName") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Text) :*: S1 ('MetaSel ('Just "fProps") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 [(Text, Text)]))) |