Safe Haskell	None
Language	Haskell2010

Types

Documentation

newtype ID Source #

Constructors

ID Int

newtype Wiggle Source #

Constructors

Wiggle Double

newtype Label Source #

Constructors

Label ByteString

Instances

Eq Label Source #
Instance details Defined in Types Methods (==) :: Label -> Label -> Bool # (/=) :: Label -> Label -> Bool #
Ord Label Source #
Instance details Defined in Types Methods compare :: Label -> Label -> Ordering # (<) :: Label -> Label -> Bool # (<=) :: Label -> Label -> Bool # (>) :: Label -> Label -> Bool # (>=) :: Label -> Label -> Bool # max :: Label -> Label -> Label # min :: Label -> Label -> Label #

newtype Frequency Source #

Constructors

Frequency Double

data Entity Source #

Constructors

Clone
Read

data FilterType Source #

Constructors

Substring
Position

Instances

Read FilterType Source #
Instance details Defined in Types Methods readsPrec :: Int -> ReadS FilterType # readList :: ReadS [FilterType] # readPrec :: ReadPrec FilterType # readListPrec :: ReadPrec [FilterType] #

data Method Source #

Constructors

Hierarchical
CompareAll

Instances

Read Method Source #
Instance details Defined in Types Methods readsPrec :: Int -> ReadS Method # readList :: ReadS [Method] # readPrec :: ReadPrec Method # readListPrec :: ReadPrec [Method] #

data AbsoluteOrFraction Source #

Constructors

Absolute
Fraction

data CurrentMinMax Source #

Constructors

CurrentMinMax
Fields minMaxDLocationNum :: !(Maybe Int, Maybe Int) minMaxSLocationNum :: !(Maybe Int, Maybe Int) minMaxDSubstringLen :: !(Int, Int) minMaxSSubstringLen :: !(Int, Int)

Instances

Eq CurrentMinMax Source #
Instance details Defined in Types Methods (==) :: CurrentMinMax -> CurrentMinMax -> Bool # (/=) :: CurrentMinMax -> CurrentMinMax -> Bool #
Ord CurrentMinMax Source #
Instance details Defined in Types Methods compare :: CurrentMinMax -> CurrentMinMax -> Ordering # (<) :: CurrentMinMax -> CurrentMinMax -> Bool # (<=) :: CurrentMinMax -> CurrentMinMax -> Bool # (>) :: CurrentMinMax -> CurrentMinMax -> Bool # (>=) :: CurrentMinMax -> CurrentMinMax -> Bool # max :: CurrentMinMax -> CurrentMinMax -> CurrentMinMax # min :: CurrentMinMax -> CurrentMinMax -> CurrentMinMax #
Show CurrentMinMax Source #
Instance details Defined in Types Methods showsPrec :: Int -> CurrentMinMax -> ShowS # show :: CurrentMinMax -> String # showList :: [CurrentMinMax] -> ShowS #

data PrintITD Source #

Constructors

PrintITD
Fields label :: !ByteString fHeader :: !ByteString fSequence :: !ByteString dSubstring :: !ByteString dLocations :: !ByteString dMutations :: !ByteString sSubstring :: !ByteString sLocation :: !ByteString sOtherLocations :: !ByteString classification :: !ByteString

Instances

Eq PrintITD Source #
Instance details Defined in Types Methods (==) :: PrintITD -> PrintITD -> Bool # (/=) :: PrintITD -> PrintITD -> Bool #
Ord PrintITD Source #
Instance details Defined in Types Methods compare :: PrintITD -> PrintITD -> Ordering # (<) :: PrintITD -> PrintITD -> Bool # (<=) :: PrintITD -> PrintITD -> Bool # (>) :: PrintITD -> PrintITD -> Bool # (>=) :: PrintITD -> PrintITD -> Bool # max :: PrintITD -> PrintITD -> PrintITD # min :: PrintITD -> PrintITD -> PrintITD #
Show PrintITD Source #
Instance details Defined in Types Methods showsPrec :: Int -> PrintITD -> ShowS # show :: PrintITD -> String # showList :: [PrintITD] -> ShowS #
Generic PrintITD Source #
Instance details Defined in Types Associated Types type Rep PrintITD :: * -> * # Methods from :: PrintITD -> Rep PrintITD x # to :: Rep PrintITD x -> PrintITD #
FromNamedRecord PrintITD Source #
Instance details Defined in Types Methods parseNamedRecord :: NamedRecord -> Parser PrintITD #
ToNamedRecord PrintITD Source #
Instance details Defined in Types Methods toNamedRecord :: PrintITD -> NamedRecord #
DefaultOrdered PrintITD Source #
Instance details Defined in Types Methods headerOrder :: PrintITD -> Header #
type Rep PrintITD Source #
Instance details Defined in Types type Rep PrintITD = D1 (MetaData "PrintITD" "Types" "collapse-duplication-0.4.0.1-4LZLu310UXN2TyBq6xFxFw" False) (C1 (MetaCons "PrintITD" PrefixI True) (((S1 (MetaSel (Just "label") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "fHeader") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString)) :: (S1 (MetaSel (Just "fSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "dSubstring") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "dLocations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString)))) :: ((S1 (MetaSel (Just "dMutations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "sSubstring") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString)) :: (S1 (MetaSel (Just "sLocation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "sOtherLocations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :*: S1 (MetaSel (Just "classification") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString))))))

data ITDInfo Source #

Constructors

ITDInfo
Fields label :: !ByteString fHeader :: !ByteString fSequence :: !ByteString dSubstring :: !ByteString dLocations :: !ByteString dMutations :: !ByteString sSubstring :: !ByteString sLocation :: !ByteString sOtherLocations :: !ByteString classification :: !ByteString dLocationNum :: !(Maybe Int) sLocationNum :: !(Maybe Int) dSubstringLen :: !Int sSubstringLen :: !Int

Instances

Eq ITDInfo Source #
Instance details Defined in Types Methods (==) :: ITDInfo -> ITDInfo -> Bool # (/=) :: ITDInfo -> ITDInfo -> Bool #
Ord ITDInfo Source #
Instance details Defined in Types Methods compare :: ITDInfo -> ITDInfo -> Ordering # (<) :: ITDInfo -> ITDInfo -> Bool # (<=) :: ITDInfo -> ITDInfo -> Bool # (>) :: ITDInfo -> ITDInfo -> Bool # (>=) :: ITDInfo -> ITDInfo -> Bool # max :: ITDInfo -> ITDInfo -> ITDInfo # min :: ITDInfo -> ITDInfo -> ITDInfo #
Show ITDInfo Source #
Instance details Defined in Types Methods showsPrec :: Int -> ITDInfo -> ShowS # show :: ITDInfo -> String # showList :: [ITDInfo] -> ShowS #

data PrintCollapsedITD Source #

Constructors

PrintCollapsedITD
Fields label :: !ByteString fHeader :: !ByteString fSequence :: !ByteString dSubstring :: !ByteString dLocations :: !ByteString dMutations :: !ByteString sSubstring :: !ByteString sLocation :: !ByteString sOtherLocations :: !ByteString classification :: !ByteString frequency :: !Double

Instances

Eq PrintCollapsedITD Source #
Instance details Defined in Types Methods (==) :: PrintCollapsedITD -> PrintCollapsedITD -> Bool # (/=) :: PrintCollapsedITD -> PrintCollapsedITD -> Bool #
Ord PrintCollapsedITD Source #
Instance details Defined in Types Methods compare :: PrintCollapsedITD -> PrintCollapsedITD -> Ordering # (<) :: PrintCollapsedITD -> PrintCollapsedITD -> Bool # (<=) :: PrintCollapsedITD -> PrintCollapsedITD -> Bool # (>) :: PrintCollapsedITD -> PrintCollapsedITD -> Bool # (>=) :: PrintCollapsedITD -> PrintCollapsedITD -> Bool # max :: PrintCollapsedITD -> PrintCollapsedITD -> PrintCollapsedITD # min :: PrintCollapsedITD -> PrintCollapsedITD -> PrintCollapsedITD #
Show PrintCollapsedITD Source #
Instance details Defined in Types Methods showsPrec :: Int -> PrintCollapsedITD -> ShowS # show :: PrintCollapsedITD -> String # showList :: [PrintCollapsedITD] -> ShowS #
Generic PrintCollapsedITD Source #
Instance details Defined in Types Associated Types type Rep PrintCollapsedITD :: * -> * # Methods from :: PrintCollapsedITD -> Rep PrintCollapsedITD x # to :: Rep PrintCollapsedITD x -> PrintCollapsedITD #
FromNamedRecord PrintCollapsedITD Source #
Instance details Defined in Types Methods parseNamedRecord :: NamedRecord -> Parser PrintCollapsedITD #
ToNamedRecord PrintCollapsedITD Source #
Instance details Defined in Types Methods toNamedRecord :: PrintCollapsedITD -> NamedRecord #
DefaultOrdered PrintCollapsedITD Source #
Instance details Defined in Types Methods headerOrder :: PrintCollapsedITD -> Header #
type Rep PrintCollapsedITD Source #
Instance details Defined in Types type Rep PrintCollapsedITD = D1 (MetaData "PrintCollapsedITD" "Types" "collapse-duplication-0.4.0.1-4LZLu310UXN2TyBq6xFxFw" False) (C1 (MetaCons "PrintCollapsedITD" PrefixI True) (((S1 (MetaSel (Just "label") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "fHeader") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString)) :: (S1 (MetaSel (Just "fSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "dSubstring") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "dLocations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString)))) :: ((S1 (MetaSel (Just "dMutations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "sSubstring") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "sLocation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString))) :: (S1 (MetaSel (Just "sOtherLocations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "classification") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "frequency") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 Double))))))

data PrintWithCloneID Source #

Constructors

PrintWithCloneID
Fields label :: !ByteString fHeader :: !ByteString fSequence :: !ByteString dSubstring :: !ByteString dLocations :: !ByteString dMutations :: !ByteString sSubstring :: !ByteString sLocation :: !ByteString sOtherLocations :: !ByteString classification :: !ByteString frequency :: !Double cloneID :: !ByteString

Instances

Eq PrintWithCloneID Source #
Instance details Defined in Types Methods (==) :: PrintWithCloneID -> PrintWithCloneID -> Bool # (/=) :: PrintWithCloneID -> PrintWithCloneID -> Bool #
Ord PrintWithCloneID Source #
Instance details Defined in Types Methods compare :: PrintWithCloneID -> PrintWithCloneID -> Ordering # (<) :: PrintWithCloneID -> PrintWithCloneID -> Bool # (<=) :: PrintWithCloneID -> PrintWithCloneID -> Bool # (>) :: PrintWithCloneID -> PrintWithCloneID -> Bool # (>=) :: PrintWithCloneID -> PrintWithCloneID -> Bool # max :: PrintWithCloneID -> PrintWithCloneID -> PrintWithCloneID # min :: PrintWithCloneID -> PrintWithCloneID -> PrintWithCloneID #
Show PrintWithCloneID Source #
Instance details Defined in Types Methods showsPrec :: Int -> PrintWithCloneID -> ShowS # show :: PrintWithCloneID -> String # showList :: [PrintWithCloneID] -> ShowS #
Generic PrintWithCloneID Source #
Instance details Defined in Types Associated Types type Rep PrintWithCloneID :: * -> * # Methods from :: PrintWithCloneID -> Rep PrintWithCloneID x # to :: Rep PrintWithCloneID x -> PrintWithCloneID #
FromNamedRecord PrintWithCloneID Source #
Instance details Defined in Types Methods parseNamedRecord :: NamedRecord -> Parser PrintWithCloneID #
ToNamedRecord PrintWithCloneID Source #
Instance details Defined in Types Methods toNamedRecord :: PrintWithCloneID -> NamedRecord #
DefaultOrdered PrintWithCloneID Source #
Instance details Defined in Types Methods headerOrder :: PrintWithCloneID -> Header #
type Rep PrintWithCloneID Source #
Instance details Defined in Types type Rep PrintWithCloneID = D1 (MetaData "PrintWithCloneID" "Types" "collapse-duplication-0.4.0.1-4LZLu310UXN2TyBq6xFxFw" False) (C1 (MetaCons "PrintWithCloneID" PrefixI True) (((S1 (MetaSel (Just "label") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "fHeader") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "fSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString))) :: (S1 (MetaSel (Just "dSubstring") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "dLocations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "dMutations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString)))) :: ((S1 (MetaSel (Just "sSubstring") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "sLocation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: S1 (MetaSel (Just "sOtherLocations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString))) :: (S1 (MetaSel (Just "classification") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString) :: (S1 (MetaSel (Just "frequency") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 Double) :*: S1 (MetaSel (Just "cloneID") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 ByteString))))))