diversity-0.7.0.0: Return the diversity at each position for all sequences in a fasta file

Safe HaskellSafe-Inferred
LanguageHaskell98

Math.Diversity.Types

Description

Collects all application specific types.

Synopsis

Documentation

type Fragment = String Source

type Sample = String Source

type Position = Int Source

type Diversity = Double Source

type Order = Double Source

type Label = String Source

type Window = Int Source

type FrequencyMap = Map (Sample, Fragment) Int Source

type PositionMap = Map Position FrequencyMap Source

At each position we have a collection of fragments to find the diversity of

type DiversityMap = Map Position Diversity Source

At each position we have a diversity