Math.Diversity.Types

Collects all application specific types.

Documentation

type Fragment = String

type Sample = String

type Position = Int

type Diversity = Double

type Order = Double

type Label = String

type Window = Int

type FrequencyMap = Map (Sample, Fragment) Int

type PositionMap = Map Position FrequencyMap

At each position we have a collection of fragments to find the diversity of

type DiversityMap = Map Position Diversity

At each position we have a diversity