elynx-markov-0.3.4: Simulate molecular sequences along trees

Index

alphabet 
1 (Function)ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)ELynx.Data.MarkovProcess.MixtureModel
appendNameELynx.Data.MarkovProcess.SubstitutionModel
appendNameComponentsELynx.Data.MarkovProcess.MixtureModel
c10StatDistsELynx.Data.MarkovProcess.CXXModelsData
c10WeightsELynx.Data.MarkovProcess.CXXModelsData
c20StatDistsELynx.Data.MarkovProcess.CXXModelsData
c20WeightsELynx.Data.MarkovProcess.CXXModelsData
c30StatDistsELynx.Data.MarkovProcess.CXXModelsData
c30WeightsELynx.Data.MarkovProcess.CXXModelsData
c40StatDistsELynx.Data.MarkovProcess.CXXModelsData
c40WeightsELynx.Data.MarkovProcess.CXXModelsData
c50StatDistsELynx.Data.MarkovProcess.CXXModelsData
c50WeightsELynx.Data.MarkovProcess.CXXModelsData
c60StatDistsELynx.Data.MarkovProcess.CXXModelsData
c60WeightsELynx.Data.MarkovProcess.CXXModelsData
ComponentELynx.Data.MarkovProcess.MixtureModel
componentsELynx.Data.MarkovProcess.MixtureModel
concatenateELynx.Data.MarkovProcess.MixtureModel
cxxELynx.Data.MarkovProcess.CXXModels
EDMComponentELynx.Import.MarkovProcess.EDMModelPhylobayes
ExchangeabilityMatrixELynx.Data.MarkovProcess.RateMatrix
exchangeabilityMatrixELynx.Data.MarkovProcess.SubstitutionModel
exchFromListLowerELynx.Data.MarkovProcess.RateMatrix
exchFromListUpperELynx.Data.MarkovProcess.RateMatrix
expandELynx.Data.MarkovProcess.GammaRateHeterogeneity
f81ELynx.Data.MarkovProcess.Nucleotide
fromExchangeabilityMatrixELynx.Data.MarkovProcess.RateMatrix
fromSubstitutionModelsELynx.Data.MarkovProcess.MixtureModel
getAlphabetELynx.Data.MarkovProcess.PhyloModel
getStationaryDistributionELynx.Data.MarkovProcess.RateMatrix
getSubstitutionModelsELynx.Data.MarkovProcess.MixtureModel
getWeightsELynx.Data.MarkovProcess.MixtureModel
gtr20ELynx.Data.MarkovProcess.AminoAcid
gtr4ELynx.Data.MarkovProcess.Nucleotide
hkyELynx.Data.MarkovProcess.Nucleotide
isValidELynx.Data.MarkovProcess.RateMatrix
jcELynx.Data.MarkovProcess.Nucleotide
jumpELynx.Simulate.MarkovProcess
lgELynx.Data.MarkovProcess.AminoAcid
lgCustomELynx.Data.MarkovProcess.AminoAcid
MixtureModel 
1 (Type/Class)ELynx.Data.MarkovProcess.MixtureModel
2 (Data Constructor)ELynx.Data.MarkovProcess.PhyloModel
NameELynx.Data.MarkovProcess.SubstitutionModel
name 
1 (Function)ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)ELynx.Data.MarkovProcess.MixtureModel
normalize 
1 (Function)ELynx.Data.MarkovProcess.RateMatrix
2 (Function)ELynx.Data.MarkovProcess.SubstitutionModel
3 (Function)ELynx.Data.MarkovProcess.MixtureModel
normalizeSDELynx.Data.MarkovProcess.RateMatrix
normalizeWithELynx.Data.MarkovProcess.RateMatrix
ParamsELynx.Data.MarkovProcess.SubstitutionModel
paramsELynx.Data.MarkovProcess.SubstitutionModel
phylobayesELynx.Import.MarkovProcess.EDMModelPhylobayes
PhyloModelELynx.Data.MarkovProcess.PhyloModel
poissonELynx.Data.MarkovProcess.AminoAcid
poissonCustomELynx.Data.MarkovProcess.AminoAcid
ProbMatrixELynx.Simulate.MarkovProcess
probMatrixELynx.Simulate.MarkovProcess
RateMatrixELynx.Data.MarkovProcess.RateMatrix
rateMatrixELynx.Data.MarkovProcess.SubstitutionModel
scale 
1 (Function)ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)ELynx.Data.MarkovProcess.MixtureModel
setDiagonalELynx.Data.MarkovProcess.RateMatrix
simulateELynx.Simulate.MarkovProcessAlongTree
simulateAndFlattenELynx.Simulate.MarkovProcessAlongTree
simulateAndFlattenMixtureModelELynx.Simulate.MarkovProcessAlongTree
simulateAndFlattenMixtureModelParELynx.Simulate.MarkovProcessAlongTree
simulateMixtureModelELynx.Simulate.MarkovProcessAlongTree
siteprofilesELynx.Import.MarkovProcess.SiteprofilesPhylobayes
StateELynx.Simulate.MarkovProcess
StationaryDistributionELynx.Data.MarkovProcess.RateMatrix
stationaryDistributionELynx.Data.MarkovProcess.SubstitutionModel
SubstitutionModel 
1 (Type/Class)ELynx.Data.MarkovProcess.SubstitutionModel
2 (Data Constructor)ELynx.Data.MarkovProcess.PhyloModel
substitutionModelELynx.Data.MarkovProcess.SubstitutionModel
substModelELynx.Data.MarkovProcess.MixtureModel
summarizeGammaRateHeterogeneityELynx.Data.MarkovProcess.GammaRateHeterogeneity
toExchangeabilityMatrixELynx.Data.MarkovProcess.RateMatrix
totalRate 
1 (Function)ELynx.Data.MarkovProcess.RateMatrix
2 (Function)ELynx.Data.MarkovProcess.SubstitutionModel
totalRateWithELynx.Data.MarkovProcess.RateMatrix
wagELynx.Data.MarkovProcess.AminoAcid
wagCustomELynx.Data.MarkovProcess.AminoAcid
WeightELynx.Data.MarkovProcess.MixtureModel
weightELynx.Data.MarkovProcess.MixtureModel