ELynx.Data.Character.Nucleotide

Creation date: Thu Oct 4 18:26:35 2018.

See header of Alphabet.

Symbol  Description  Bases represented  Complement
------  -----------  -----------------  ----------
A       Adenine      A                  T
C       Cytosine        C               G
G       Guanine            G            C
T       Thymine               T         A

Documentation

data Nucleotide

Nucleotides.

Constructors

A

C

G

T

Instances

Bounded Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

minBound :: Nucleotide

maxBound :: Nucleotide

Enum Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

succ :: Nucleotide -> Nucleotide

pred :: Nucleotide -> Nucleotide

toEnum :: Int -> Nucleotide

fromEnum :: Nucleotide -> Int

enumFrom :: Nucleotide -> [Nucleotide]

enumFromThen :: Nucleotide -> Nucleotide -> [Nucleotide]

enumFromTo :: Nucleotide -> Nucleotide -> [Nucleotide]

enumFromThenTo :: Nucleotide -> Nucleotide -> Nucleotide -> [Nucleotide]

Eq Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

(==) :: Nucleotide -> Nucleotide -> Bool

(/=) :: Nucleotide -> Nucleotide -> Bool

Ord Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

compare :: Nucleotide -> Nucleotide -> Ordering

(<) :: Nucleotide -> Nucleotide -> Bool

(<=) :: Nucleotide -> Nucleotide -> Bool

(>) :: Nucleotide -> Nucleotide -> Bool

(>=) :: Nucleotide -> Nucleotide -> Bool

max :: Nucleotide -> Nucleotide -> Nucleotide

min :: Nucleotide -> Nucleotide -> Nucleotide

Read Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

readsPrec :: Int -> ReadS Nucleotide

readList :: ReadS [Nucleotide]

readPrec :: ReadPrec Nucleotide

readListPrec :: ReadPrec [Nucleotide]

Show Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

showsPrec :: Int -> Nucleotide -> ShowS

show :: Nucleotide -> String

showList :: [Nucleotide] -> ShowS

Unbox Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Character Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

toWord :: Nucleotide -> Word8

fromWord :: Word8 -> Nucleotide

Vector Vector Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) Nucleotide -> m (Vector Nucleotide)

basicUnsafeThaw :: PrimMonad m => Vector Nucleotide -> m (Mutable Vector (PrimState m) Nucleotide)

basicLength :: Vector Nucleotide -> Int

basicUnsafeSlice :: Int -> Int -> Vector Nucleotide -> Vector Nucleotide

basicUnsafeIndexM :: Monad m => Vector Nucleotide -> Int -> m Nucleotide

basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) Nucleotide -> Vector Nucleotide -> m ()

elemseq :: Vector Nucleotide -> Nucleotide -> b -> b

MVector MVector Nucleotide

Defined in ELynx.Data.Character.Nucleotide

Methods

basicLength :: MVector s Nucleotide -> Int

basicUnsafeSlice :: Int -> Int -> MVector s Nucleotide -> MVector s Nucleotide

basicOverlaps :: MVector s Nucleotide -> MVector s Nucleotide -> Bool

basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) Nucleotide)

basicInitialize :: PrimMonad m => MVector (PrimState m) Nucleotide -> m ()

basicUnsafeReplicate :: PrimMonad m => Int -> Nucleotide -> m (MVector (PrimState m) Nucleotide)

basicUnsafeRead :: PrimMonad m => MVector (PrimState m) Nucleotide -> Int -> m Nucleotide

basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) Nucleotide -> Int -> Nucleotide -> m ()

basicClear :: PrimMonad m => MVector (PrimState m) Nucleotide -> m ()

basicSet :: PrimMonad m => MVector (PrimState m) Nucleotide -> Nucleotide -> m ()

basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) Nucleotide -> MVector (PrimState m) Nucleotide -> m ()

basicUnsafeMove :: PrimMonad m => MVector (PrimState m) Nucleotide -> MVector (PrimState m) Nucleotide -> m ()

basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) Nucleotide -> Int -> m (MVector (PrimState m) Nucleotide)

newtype Vector Nucleotide

Defined in ELynx.Data.Character.Nucleotide

newtype Vector Nucleotide = V_Nucleotide (Vector Word8)

newtype MVector s Nucleotide

Defined in ELynx.Data.Character.Nucleotide

newtype MVector s Nucleotide = MV_Nucleotide (MVector s Word8)