ELynx.Character.AminoAcidS

Creation date: Thu Oct 4 18:26:35 2018.

See header of Alphabet.

Amino acids with gaps and translation stops.

Amino Acid Code:  Three letter Code:  Amino Acid:
----------------  ------------------  -----------
A                 Ala                 Alanine
C                 Cys                 Cysteine
D                 Asp                 Aspartic Acid
E                 Glu                 Glutamic Acid
F                 Phe                 Phenylalanine
G                 Gly                 Glycine
H                 His                 Histidine
I                 Ile                 Isoleucine
K                 Lys                 Lysine
L                 Leu                 Leucine
M                 Met                 Methionine
N                 Asn                 Asparagine
P                 Pro                 Proline
Q                 Gln                 Glutamine
R                 Arg                 Arginine
S                 Ser                 Serine
T                 Thr                 Threonine
V                 Val                 Valine
W                 Trp                 Tryptophan
Y                 Tyr                 Tyrosine
----------------  ------------------  -----------
*                 Stp                 No amino acid
----------------  ------------------  -----------
-                 Gap                 No amino acid (preferred)
.                 Gap                 No amino acid

Documentation

data AminoAcidS

Amino acids.

Constructors

A

C

D

E

F

G

H

I

K

L

M

N

P

Q

R

S

T

V

W

Y

Stop

Gap

Instances

Bounded AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

minBound :: AminoAcidS

maxBound :: AminoAcidS

Enum AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

succ :: AminoAcidS -> AminoAcidS

pred :: AminoAcidS -> AminoAcidS

toEnum :: Int -> AminoAcidS

fromEnum :: AminoAcidS -> Int

enumFrom :: AminoAcidS -> [AminoAcidS]

enumFromThen :: AminoAcidS -> AminoAcidS -> [AminoAcidS]

enumFromTo :: AminoAcidS -> AminoAcidS -> [AminoAcidS]

enumFromThenTo :: AminoAcidS -> AminoAcidS -> AminoAcidS -> [AminoAcidS]

Eq AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

(==) :: AminoAcidS -> AminoAcidS -> Bool

(/=) :: AminoAcidS -> AminoAcidS -> Bool

Ord AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

compare :: AminoAcidS -> AminoAcidS -> Ordering

(<) :: AminoAcidS -> AminoAcidS -> Bool

(<=) :: AminoAcidS -> AminoAcidS -> Bool

(>) :: AminoAcidS -> AminoAcidS -> Bool

(>=) :: AminoAcidS -> AminoAcidS -> Bool

max :: AminoAcidS -> AminoAcidS -> AminoAcidS

min :: AminoAcidS -> AminoAcidS -> AminoAcidS

Read AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

readsPrec :: Int -> ReadS AminoAcidS

readList :: ReadS [AminoAcidS]

readPrec :: ReadPrec AminoAcidS

readListPrec :: ReadPrec [AminoAcidS]

Show AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

showsPrec :: Int -> AminoAcidS -> ShowS

show :: AminoAcidS -> String

showList :: [AminoAcidS] -> ShowS

Unbox AminoAcidS

Defined in ELynx.Character.AminoAcidS

CharacterX AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

gap :: AminoAcidS

Character AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

toWord :: AminoAcidS -> Word8

fromWord :: Word8 -> AminoAcidS

Vector Vector AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) AminoAcidS -> m (Vector AminoAcidS)

basicUnsafeThaw :: PrimMonad m => Vector AminoAcidS -> m (Mutable Vector (PrimState m) AminoAcidS)

basicLength :: Vector AminoAcidS -> Int

basicUnsafeSlice :: Int -> Int -> Vector AminoAcidS -> Vector AminoAcidS

basicUnsafeIndexM :: Monad m => Vector AminoAcidS -> Int -> m AminoAcidS

basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) AminoAcidS -> Vector AminoAcidS -> m ()

elemseq :: Vector AminoAcidS -> AminoAcidS -> b -> b

MVector MVector AminoAcidS

Defined in ELynx.Character.AminoAcidS

Methods

basicLength :: MVector s AminoAcidS -> Int

basicUnsafeSlice :: Int -> Int -> MVector s AminoAcidS -> MVector s AminoAcidS

basicOverlaps :: MVector s AminoAcidS -> MVector s AminoAcidS -> Bool

basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) AminoAcidS)

basicInitialize :: PrimMonad m => MVector (PrimState m) AminoAcidS -> m ()

basicUnsafeReplicate :: PrimMonad m => Int -> AminoAcidS -> m (MVector (PrimState m) AminoAcidS)

basicUnsafeRead :: PrimMonad m => MVector (PrimState m) AminoAcidS -> Int -> m AminoAcidS

basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) AminoAcidS -> Int -> AminoAcidS -> m ()

basicClear :: PrimMonad m => MVector (PrimState m) AminoAcidS -> m ()

basicSet :: PrimMonad m => MVector (PrimState m) AminoAcidS -> AminoAcidS -> m ()

basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) AminoAcidS -> MVector (PrimState m) AminoAcidS -> m ()

basicUnsafeMove :: PrimMonad m => MVector (PrimState m) AminoAcidS -> MVector (PrimState m) AminoAcidS -> m ()

basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) AminoAcidS -> Int -> m (MVector (PrimState m) AminoAcidS)

newtype Vector AminoAcidS

Defined in ELynx.Character.AminoAcidS

newtype Vector AminoAcidS = V_AminoAcidS (Vector Word8)

newtype MVector s AminoAcidS

Defined in ELynx.Character.AminoAcidS

newtype MVector s AminoAcidS = MV_AminoAcidS (MVector s Word8)