ELynx.Data.Tree.BranchSupportTree

Creation date: Thu Jun 13 14:06:45 2019.

Documentation

type BranchSupport = Maybe Double

At the moment, just use Double. It would be preferable to use a wrapper data type that can handle Int or Double.

class BranchSupportLabel a where

A label that supports branch support values.

Methods

getBranchSupport :: a -> BranchSupport

For now, branch support is a Double, but one could also think about bootstrap values, which are integers.

setBranchSupport :: BranchSupport -> a -> a

Instances

BranchSupportLabel (PhyloLabel a)

Defined in ELynx.Data.Tree.PhyloTree

Methods

getBranchSupport :: PhyloLabel a -> BranchSupport

setBranchSupport :: BranchSupport -> PhyloLabel a -> PhyloLabel a

normalize :: BranchSupportLabel a => Tree a -> Tree a

Normalize branch support values. The maximum branch support value will be set to 1.0.

collapse :: BranchSupportLabel a => Double -> Tree a -> Tree a

Collapse branches with support lower than given value. Note, branch length is ignored at the moment.