ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Creation date: Tue Feb 13 13:16:18 2018.

See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005.

Distribution of the values of the point process such that it corresponds to reconstructed trees under the birth and death process; critical birth and death process with lambda=mu.

Documentation

newtype BirthDeathCriticalNoTimeDistribution

Distribution of the values of the point process such that it corresponds to a reconstructed tree of the birth and death process.

Constructors

BDCNTD

Fields

• bdcntdLa :: Rate

  Birth and death rate.

Instances

Eq BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Methods

(==) :: BirthDeathCriticalNoTimeDistribution -> BirthDeathCriticalNoTimeDistribution -> Bool

(/=) :: BirthDeathCriticalNoTimeDistribution -> BirthDeathCriticalNoTimeDistribution -> Bool

Data BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BirthDeathCriticalNoTimeDistribution -> c BirthDeathCriticalNoTimeDistribution

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BirthDeathCriticalNoTimeDistribution

toConstr :: BirthDeathCriticalNoTimeDistribution -> Constr

dataTypeOf :: BirthDeathCriticalNoTimeDistribution -> DataType

dataCast1 :: Typeable t => (forall d. Data d => c (t d)) -> Maybe (c BirthDeathCriticalNoTimeDistribution)

dataCast2 :: Typeable t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BirthDeathCriticalNoTimeDistribution)

gmapT :: (forall b. Data b => b -> b) -> BirthDeathCriticalNoTimeDistribution -> BirthDeathCriticalNoTimeDistribution

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathCriticalNoTimeDistribution -> r

gmapQr :: forall r r'. (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BirthDeathCriticalNoTimeDistribution -> r

gmapQ :: (forall d. Data d => d -> u) -> BirthDeathCriticalNoTimeDistribution -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> BirthDeathCriticalNoTimeDistribution -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> BirthDeathCriticalNoTimeDistribution -> m BirthDeathCriticalNoTimeDistribution

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathCriticalNoTimeDistribution -> m BirthDeathCriticalNoTimeDistribution

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BirthDeathCriticalNoTimeDistribution -> m BirthDeathCriticalNoTimeDistribution

Generic BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Associated Types

type Rep BirthDeathCriticalNoTimeDistribution :: Type -> Type

Methods

from :: BirthDeathCriticalNoTimeDistribution -> Rep BirthDeathCriticalNoTimeDistribution x

to :: Rep BirthDeathCriticalNoTimeDistribution x -> BirthDeathCriticalNoTimeDistribution

Distribution BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Methods

cumulative :: BirthDeathCriticalNoTimeDistribution -> Double -> Double

complCumulative :: BirthDeathCriticalNoTimeDistribution -> Double -> Double

ContDistr BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Methods

density :: BirthDeathCriticalNoTimeDistribution -> Double -> Double

quantile :: BirthDeathCriticalNoTimeDistribution -> Double -> Double

complQuantile :: BirthDeathCriticalNoTimeDistribution -> Double -> Double

logDensity :: BirthDeathCriticalNoTimeDistribution -> Double -> Double

ContGen BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

Methods

genContVar :: PrimMonad m => BirthDeathCriticalNoTimeDistribution -> Gen (PrimState m) -> m Double

type Rep BirthDeathCriticalNoTimeDistribution

Defined in ELynx.Tree.Distribution.BirthDeathCriticalNoTime

type Rep BirthDeathCriticalNoTimeDistribution = D1 ('MetaData "BirthDeathCriticalNoTimeDistribution" "ELynx.Tree.Distribution.BirthDeathCriticalNoTime" "elynx-tree-0.5.0.2-GziknJIwzW98btoIzMRbOK" 'True) (C1 ('MetaCons "BDCNTD" 'PrefixI 'True) (S1 ('MetaSel ('Just "bdcntdLa") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Rate)))

cumulative :: BirthDeathCriticalNoTimeDistribution -> Time -> Double

Cumulative distribution function section 2.1.2, second formula.

density :: BirthDeathCriticalNoTimeDistribution -> Time -> Double

Density function section 2.1.2, first formula; t cancels out because it is expected to be much larger than 1.0; because t in [0, infty].

quantile :: BirthDeathCriticalNoTimeDistribution -> Double -> Time

Inverted cumulative probability distribution cumulative. See also ContDistr.