ELynx.Tree.Supported

Creation date: Thu Jun 13 14:06:45 2019.

Non-negative support value

data Support

Non-negative support value.

However, non-negativity is only checked with toSupport, and negative values can be obtained using the Num and related instances.

See also the documentation of Length.

Instances

Enum Support

Defined in ELynx.Tree.Supported

Methods

succ :: Support -> Support

pred :: Support -> Support

toEnum :: Int -> Support

fromEnum :: Support -> Int

enumFrom :: Support -> [Support]

enumFromThen :: Support -> Support -> [Support]

enumFromTo :: Support -> Support -> [Support]

enumFromThenTo :: Support -> Support -> Support -> [Support]

Eq Support

Defined in ELynx.Tree.Supported

Methods

(==) :: Support -> Support -> Bool

(/=) :: Support -> Support -> Bool

Floating Support

Defined in ELynx.Tree.Supported

Methods

pi :: Support

exp :: Support -> Support

log :: Support -> Support

sqrt :: Support -> Support

(**) :: Support -> Support -> Support

logBase :: Support -> Support -> Support

sin :: Support -> Support

cos :: Support -> Support

tan :: Support -> Support

asin :: Support -> Support

acos :: Support -> Support

atan :: Support -> Support

sinh :: Support -> Support

cosh :: Support -> Support

tanh :: Support -> Support

asinh :: Support -> Support

acosh :: Support -> Support

atanh :: Support -> Support

log1p :: Support -> Support

expm1 :: Support -> Support

log1pexp :: Support -> Support

log1mexp :: Support -> Support

Fractional Support

Defined in ELynx.Tree.Supported

Methods

(/) :: Support -> Support -> Support

recip :: Support -> Support

fromRational :: Rational -> Support

Num Support

Defined in ELynx.Tree.Supported

Methods

(+) :: Support -> Support -> Support

(-) :: Support -> Support -> Support

(*) :: Support -> Support -> Support

negate :: Support -> Support

abs :: Support -> Support

signum :: Support -> Support

fromInteger :: Integer -> Support

Ord Support

Defined in ELynx.Tree.Supported

Methods

compare :: Support -> Support -> Ordering

(<) :: Support -> Support -> Bool

(<=) :: Support -> Support -> Bool

(>) :: Support -> Support -> Bool

(>=) :: Support -> Support -> Bool

max :: Support -> Support -> Support

min :: Support -> Support -> Support

Read Support

Defined in ELynx.Tree.Supported

Methods

readsPrec :: Int -> ReadS Support

readList :: ReadS [Support]

readPrec :: ReadPrec Support

readListPrec :: ReadPrec [Support]

Real Support

Defined in ELynx.Tree.Supported

Methods

toRational :: Support -> Rational

RealFloat Support

Defined in ELynx.Tree.Supported

Methods

floatRadix :: Support -> Integer

floatDigits :: Support -> Int

floatRange :: Support -> (Int, Int)

decodeFloat :: Support -> (Integer, Int)

encodeFloat :: Integer -> Int -> Support

exponent :: Support -> Int

significand :: Support -> Support

scaleFloat :: Int -> Support -> Support

isNaN :: Support -> Bool

isInfinite :: Support -> Bool

isDenormalized :: Support -> Bool

isNegativeZero :: Support -> Bool

isIEEE :: Support -> Bool

atan2 :: Support -> Support -> Support

RealFrac Support

Defined in ELynx.Tree.Supported

Methods

properFraction :: Integral b => Support -> (b, Support)

truncate :: Integral b => Support -> b

round :: Integral b => Support -> b

ceiling :: Integral b => Support -> b

floor :: Integral b => Support -> b

Show Support

Defined in ELynx.Tree.Supported

Methods

showsPrec :: Int -> Support -> ShowS

show :: Support -> String

showList :: [Support] -> ShowS

Generic Support

Defined in ELynx.Tree.Supported

Associated Types

type Rep Support :: Type -> Type

Methods

from :: Support -> Rep Support x

to :: Rep Support x -> Support

Semigroup Support

Defined in ELynx.Tree.Supported

Methods

(<>) :: Support -> Support -> Support

sconcat :: NonEmpty Support -> Support

stimes :: Integral b => b -> Support -> Support

NFData Support

Defined in ELynx.Tree.Supported

Methods

rnf :: Support -> ()

ToJSON Support

Defined in ELynx.Tree.Supported

Methods

toJSON :: Support -> Value

toEncoding :: Support -> Encoding

toJSONList :: [Support] -> Value

toEncodingList :: [Support] -> Encoding

FromJSON Support

Defined in ELynx.Tree.Supported

Methods

parseJSON :: Value -> Parser Support

parseJSONList :: Value -> Parser [Support]

Splittable Support

Defined in ELynx.Tree.Supported

Methods

split :: Support -> Support

Supported Support

Defined in ELynx.Tree.Supported

Methods

getSup :: Support -> Support

setSup :: Support -> Support -> Support

modSup :: (Support -> Support) -> Support -> Support

type Rep Support

Defined in ELynx.Tree.Supported

type Rep Support = D1 ('MetaData "Support" "ELynx.Tree.Supported" "elynx-tree-0.5.0-LNeltioHkaNAWvI1l3dP6J" 'True) (C1 ('MetaCons "Support" 'PrefixI 'True) (S1 ('MetaSel ('Just "fromSupport") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Double)))

toSupport :: Double -> Either String Support

Nothing if support is negative.

toSupportUnsafe :: Double -> Support

Do not check if support value is negative.

class Supported e where

A data type that supports extraction, setting and modifying of support values.

Methods

getSup :: e -> Support

setSup :: Support -> e -> e

modSup :: (Support -> Support) -> e -> e

Instances

Supported Support

Defined in ELynx.Tree.Supported

Methods

getSup :: Support -> Support

setSup :: Support -> Support -> Support

modSup :: (Support -> Support) -> Support -> Support

Supported PhyloExplicit

Defined in ELynx.Tree.Phylogeny

Methods

getSup :: PhyloExplicit -> Support

setSup :: Support -> PhyloExplicit -> PhyloExplicit

modSup :: (Support -> Support) -> PhyloExplicit -> PhyloExplicit

Functions on trees

normalizeBranchSupport :: Supported e => Tree e a -> Tree e a

Normalize branch support values. The maximum branch support value will be set to 1.0.

collapse :: (Eq e, Eq a, Supported e) => Support -> Tree e a -> Tree e a

Collapse branches with support lower than given value.

The branch and node labels of the collapsed branches are discarded.