Data.Fasta.ByteString.Types

Collects all application specific types. Used here for Text.

Documentation

data FastaSequence

Constructors

FastaSequence

Fields

• fastaHeader :: ByteString
• fastaSeq :: ByteString

Instances

Eq FastaSequence

Methods

(==) :: FastaSequence -> FastaSequence -> Bool

(/=) :: FastaSequence -> FastaSequence -> Bool

Ord FastaSequence

Methods

compare :: FastaSequence -> FastaSequence -> Ordering

(<) :: FastaSequence -> FastaSequence -> Bool

(<=) :: FastaSequence -> FastaSequence -> Bool

(>) :: FastaSequence -> FastaSequence -> Bool

(>=) :: FastaSequence -> FastaSequence -> Bool

max :: FastaSequence -> FastaSequence -> FastaSequence

min :: FastaSequence -> FastaSequence -> FastaSequence

Show FastaSequence

Methods

showsPrec :: Int -> FastaSequence -> ShowS

show :: FastaSequence -> String

showList :: [FastaSequence] -> ShowS

ShowFasta FastaSequence

Methods

showFasta :: FastaSequence -> ByteString

type Codon = ByteString

type AA = Char

type Clone = FastaSequence

type Germline = FastaSequence

type CloneMap = Map (Int, Germline) [Clone]

A clone is a collection of sequences derived from a germline with a specific identifier

class ShowFasta a where

Minimal complete definition

showFasta

Methods

showFasta :: a -> ByteString

Instances

ShowFasta FastaSequence

Methods

showFasta :: FastaSequence -> ByteString